Job Description P0AAE8 Confidence 99.91% Date Thu Jan 5 11:12:43 GMT 2012 Rank 3 Aligned Residues 433 % Identity 10% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.
Predicted Secondary structure																																							.	.																																								.
Query SS confidence																																							.	.																																								.
Query Sequence		M	S	S	A	K	K	I	G	L	F	A	C	T	G	V	V	A	G	N	M	M	G	S	G	I	A	L	L	P	A	N	L	A	S	I	G	G	.	.	I	A	I	W	G	W	I	I	S	I	I	G	A	M	S	L	A	Y	V	Y	A	R	L	A	T	K	N	P	Q	Q	G	G	P	I	A	Y	A	G	E	.	I
Query Conservation																																							.	.																																								.
Alig confidence																																							.	.																													.	.										.
Template Conservation																																																																					.	.
Template Sequence		R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	I	N	F	T	V	A	A	R	M	P	F
Template Known Secondary structure			G	G	G			B															S	T										T	T	T	S																								T								.	.							T	T	T	T	S
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	A	F	G	F	Q	T	G	V	L	Y	Y	H	A	N	W	I	G	N	L	A	I	G	I	T	A	V	S	Y	L	S	T	F	F	P	V	L	N	D	P	V	P	A	G	I	A	C	I	A	I	V	W	V	F	T	F	V	N	M	L	G	G	T	W	V	S	R	L	T	T	I	G	L	V	L	V	L	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L	A	M
Template Known Secondary structure			T	T	T	T																																																							T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		V	V	M	T	A	I	V	G	W	H	W	F	D	A	A	.	.	.	T	Y	A	A	N	W	N	T	A	D	T	T	D	G	H	A	I	I	K	S	I	L	L	C	L	W	A	F	V	G	V	E	S	A	A	V	S	T	G	M	V	K	N	P	K	R	T	V	P	L	A	T	M	L	G	T	G	L	A	G	I	V
Query Conservation																	.	.	.
Alig confidence																	.	.	.
Template Conservation
Template Sequence		G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L
Template Known Secondary structure														T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	A	A	T	Q	V	L	S	G	M	Y	P	S	S	V	M	A	A	S	G	A	P	F	A	I	S	A	S	T	I	L	G	N	W	A	A	P	L	V	S	A	F	T	A	F	A	C	L	T	S	L	G	S	W	M	M	L	V	G	Q	A	G	V	R	A	A	N	D	G	N	F	P	K	V	Y	G	E	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	T
Template Known Secondary structure																						S		S											T																				T	T						T											S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.							.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.
Query Sequence		S	N	G	I	P	K	K	G	L	L	L	A	A	V	K	M	T	A	L	M	I	L	I	T	L	M	N	S	A	G	G	K	A	S	D	L	F	G	E	L	T	G	I	A	V	L	L	T	M	L	P	Y	F	Y	S	C	V	D	L	.	.	.	.	.	.	I	R	F	E	G	V	N	I	R	N	F	V	S	L	I
Query Conservation																																																													.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.												T		G	G	G	T														T	T													T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	S	V	L	G	C	V	F	C	F	I	A	L	M	G	A	S	S	F	E	L	A	G	T	F	I	V	S	L	I	I	L	M	F	Y	A	R	K	M	H	E	R	Q	S	H	S	M	D	N	H	T	A	S	N	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E	D	Y
Template Known Secondary structure																T		G	G	G																					T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.