Job Description P04425 Confidence 99.92% Date Thu Jan 5 10:58:17 GMT 2012 Rank 28 Aligned Residues 284 % Identity 13% Template c3tqtB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii Resolution 1.88 Å

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		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																.	.	.	60	.	.	.	.	.
Predicted Secondary structure									.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	V	K	Q	N	Y	E	E
Query Conservation									.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																																		.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		L	H	I	S	V	L	C	G	G	Q	S	T	E	H	E	I	S	I	Q	S	A	K	N	I	V	N	T	L	D	A	A	K	Y	L	I	S	V	I	F	I	D	.	.	.	.	.	.	H	V	G	R	W	Y	L	I	D	Q	P	E	M	F	L	A	H	S	P	D	H	L	V	K	E	G	S	A	R	P	I	T	I
Template Known Secondary structure											S	S	T	T															S		T	T	T										.	.	.	.	.	.	T	T	S														S									T		S
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140
Predicted Secondary structure																																																		.																					.	.	.	.
Query SS confidence																																																		.																					.	.	.	.
Query Sequence		W	F	S	F	V	G	E	Q	D	L	P	L	A	D	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V
Query Conservation																																																		.																					.	.	.	.
Alig confidence																															.	.	.	.																.																					.	.	.	.
Template Conservation																															.	.	.	.
Template Sequence		A	F	K	P	W	Q	S	L	D	G	R	R	Y	S	A	D	C	V	F	P	M	V	H	G	T	Q	G	E	D	.	.	.	.	G	A	L	Q	G	L	L	E	L	L	N	L	P	Y	V	G	A	N	V	Q	S	S	A	V	C	M	E	K	D	L	T	K	T	V	L	R	A	G	G	I	P	V	V	D	W	H	T
Template Known Secondary structure																	S								S	T	T	T	T	S	.	.	.	.	S									T	T			B	S	S											S											T	T			B
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.
Query Sequence		T	R	N	K	A	Q	L	K	A	F	W	E	K	.	.	.	.	.	.	H	S	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V
Query Conservation															.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																																					.	.											.	.	.
Template Conservation																																																									.	.											.	.	.
Template Sequence		L	S	P	R	D	A	T	E	G	V	Y	Q	R	L	L	D	R	W	G	T	S	E	L	F	V	K	A	V	S	L	G	S	S	V	A	T	L	P	V	K	T	E	T	E	F	T	K	A	V	K	E	V	F	R	Y	.	.	D	D	R	L	M	V	E	P	R	I	.	.	.	R	G	R	E	I	E	C	A	V	L
Template Known Secondary structure				T	T	S			T	T										S		S							S	S			S	G	G	G						S												T	T	T	.	.		S									.	.	.		S
Template Predicted Secondary structure																																																									.	.											.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.												.
Query SS confidence																																																																	.	.	.	.	.												.
Query Sequence		D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	G	E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	V	T	S	P	T	.
Query Conservation																																																																	.	.	.	.	.												.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																																							.	.										.	.	.	.	.									.			.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.																																							.	.																							.
Template Sequence		G	N	G	.	.	.	.	.	.	.	.	.	.	.	A	P	K	A	S	L	P	G	E	I	I	T	T	T	T	S	E	S	V	T	K	Q	I	Q	Q	I	A	I	D	A	F	K	M	V	H	C	S	G	.	.	M	A	R	V	D	F	F	V	T	P	N	N	K	V	L	V	N	E	I	N	T	I	.	P	G	F
Template Known Secondary structure			S	S	.	.	.	.	.	.	.	.	.	.	.	S																																	T	T				.	.										T	T										S	S	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.																																							.	.																							.
Template SS confidence
		236	.	.												.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.
						289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	C	I	R	E	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E	A	R	L	Q
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		T	N	I	S	M	Y	P	K	M	W	E	A	S	G	L	P	C	P	N	L	L	D	Q	L	I	E	L	A	I	D
Template Known Secondary structure		S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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