Job Description P04425 Confidence 99.92% Date Thu Jan 5 10:58:17 GMT 2012 Rank 26 Aligned Residues 299 % Identity 15% Template c3se7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:vana; PDBTitle: ancient vana Resolution 3.07 Å

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		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.									.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure									.																																			.	.	.	.	.	.	.	.
Query SS confidence									.																																			.	.	.	.	.	.	.	.
Query Sequence		I	K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	.	.	.	.	.	.	.	.	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E
Query Conservation									.																																			.	.	.	.	.	.	.	.
Alig confidence									.																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	K	I	G	I	I	F	G	G	V	S	E	E	H	D	I	S	V	K	S	A	R	E	V	A	T	H	L	G	T	G	V	F	E	P	F	Y	L	G	I	T	K	S	G	A	W	Q	L	C	D	G	P	G	E	N	W	E	D	G	N	C	R	P	A	V	L	S	P	D	R	S	V	H	G	L	L	V	L	E	Q
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S						S		S	S	S	S	S	S	S	S											T	T	T								T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																											.																					.	.	.	.
Query SS confidence																																											.																					.	.	.	.
Query Sequence		Q	D	L	P	L	A	D	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L
Query Conservation																																											.																					.	.	.	.
Alig confidence														.	.	.	.																										.																					.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		G	K	Y	E	T	I	R	L	D	L	V	L	.	.	.	.	P	V	L	H	G	K	L	G	E	D	G	A	I	Q	G	L	L	E	L	S	G	I	P	Y	V	G	C	D	I	Q	S	S	A	L	C	M	D	K	S	L	T	Y	L	V	A	R	S	A	G	I	A	T	P	N	F	W	T	V	T	A	D	E	K	I
Template Known Secondary structure		T								S				.	.	.	.					S	T	T	T	T	S	S													B	S	S											S											T	T		B									T	T	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	F	W	E	K	H	S	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P
Query Conservation
Alig confidence					.																																						.	.															.
Template Conservation					.																																						.	.															.
Template Sequence		P	T	D	.	Q	L	T	Y	P	V	F	V	K	P	A	R	S	G	S	S	F	G	V	S	K	V	A	R	E	E	D	L	Q	G	A	V	E	A	A	R	E	.	.	Y	D	S	K	V	L	I	E	E	A	V	I	G	T	.	E	I	G	C	A	V	M	G	N	G	P	E	L	I	T	G	E	V	D	Q	I	T
Template Known Secondary structure			T	T	.	T			S	S						S	S			T	T	T	T						S												T	T	.	.	T		S										S		.										T	T
Template Predicted Secondary structure					.																																						.	.															.
Template SS confidence
		157	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.	.	.	.	.							290	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.													.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.													.	.	.	.	.	.
Query Sequence		Q	G	G	E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	V	T	S	P	T	C	.	.	.	.	.	.	I	R	E	I	E	A	E
Query Conservation																																																				.	.	.	.	.													.	.	.	.	.	.
Alig confidence					.																																				.	.										.	.	.	.	.									.	.			.	.	.	.	.	.
Template Conservation					.																																				.	.																							.	.
Template Sequence		L	S	G	.	S	D	N	S	A	V	T	V	P	A	D	I	S	T	T	S	R	S	L	V	Q	D	T	A	K	A	V	Y	R	A	L	G	C	R	G	.	.	L	S	R	V	D	L	F	L	T	E	D	G	K	V	V	L	N	E	V	N	T	F	.	.	P	G	M	T	S	Y	S	R	Y	P	R	M	M	T	A
Template Known Secondary structure					.	G	G	G	S				S	S																							T				.	.										T	T	S									S	S	.	.				S	T	T
Template Predicted Secondary structure					.																																				.	.																							.	.
Template SS confidence
		233	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	V	S	I	T	G	M	L	M	D	A	I	E	A	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	L	S	R	A	D	V	I	D	R	L	V	S	L	A	L
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions