Job Description P04425 Confidence 99.88% Date Thu Jan 5 10:58:17 GMT 2012 Rank 44 Aligned Residues 273 % Identity 15% Template c3r23B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		I	K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D	L
Query Conservation									.
Alig confidence									.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	R	I	G	V	I	X	G	G	V	S	S	E	K	Q	V	S	I	X	T	G	N	E	X	I	A	N	L	D	K	N	K	Y	E	I	V	P	I	T	L	N	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	D	L	I	E	K	A	K	D	I
Template Known Secondary structure											S																		S		T	T	T									S	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G					G	G	G
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																												.	.	.	.	.	.	50	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.
Predicted Secondary structure																																			.																					.	.	.	.															.
Query SS confidence																																			.																					.	.	.	.															.
Query Sequence		D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L	.	K	A	F	W	E	K	H
Query Conservation																																			.																					.	.	.	.															.
Alig confidence						.	.	.	.																										.																					.	.	.	.															.
Template Conservation						.	.	.	.
Template Sequence		D	F	A	L	.	.	.	.	L	A	L	H	G	K	Y	G	E	D	G	T	V	Q	G	T	L	E	S	L	G	I	P	Y	S	G	S	N	X	L	S	S	G	I	C	X	D	K	N	I	S	K	K	I	L	R	Y	E	G	I	E	T	P	D	W	I	E	L	T	K	X	E	D	L	N	F	D	E	L	D	K	L
Template Known Secondary structure		S				.	.	.	.					S					S	S									T	T			B	S	S	S																					T	T											S	S	S								T	T	T
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		54	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		155		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.
Predicted Secondary structure			.																																																																											.	.
Query SS confidence			.																																																																											.	.
Query Sequence		S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	.	.	G	E
Query Conservation			.																																																																											.	.
Alig confidence			.																															.	.	.	.	.	.												.	.	.																									.	.
Template Conservation																																		.	.	.	.	.	.												.	.	.
Template Sequence		G	F	P	L	V	V	K	P	N	S	G	G	V	K	I	V	Y	D	K	D	E	L	I	S	X	L	E	T	V	F	E	W	.	.	.	.	.	.	D	S	E	V	V	I	E	K	Y	I	K	.	.	.	G	E	E	I	T	C	S	I	F	D	G	K	Q	L	P	I	I	S	I	R	H	A	A	E	F	F	D	Y
Template Known Secondary structure			S	S						S									S	T	T													.	.	.	.	.	.		S										.	.	.	S									T	T																T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.												.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.					290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																											.	.	.	.															.	.	.	.
Query SS confidence																				.	.	.	.																											.	.	.	.															.	.	.	.
Query Sequence		T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	.	.	.	.	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	.	.	.	.	G	D	R	L	T	E	I	N	V	T	S	P	T	C	.	.	.	.	I	R	E	I	E	A	E	F	P	V
Query Conservation																				.	.	.	.																											.	.	.	.															.	.	.	.
Alig confidence																				.	.	.	.																			.	.							.	.	.	.															.	.	.	.
Template Conservation																																										.	.
Template Sequence		N	A	K	Y	D	D	A	S	T	I	E	E	V	I	E	L	P	A	E	L	K	E	R	V	N	K	A	S	L	A	C	Y	K	A	L	K	C	S	V	Y	.	.	A	R	V	D	X	X	V	K	D	G	I	P	Y	V	X	E	V	N	T	L	P	G	X	T	Q	A	S	L	L	P	K	S	A	D	A	A	G	I
Template Known Secondary structure		T	T				S																													T	T			S		.	.									T	T									S	S				S	T	T	S									T	T
Template Predicted Secondary structure																																										.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	T	G	M	L	M	D	A	I	E	A	R	L	Q	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Y	S	K	L	L	D	X	I	I	E	T	S	L	R	V	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions