Phyre 2 alignment of P04425 with c3ouzA

Job Description P04425
Confidence 99.93% Date Thu Jan 5 10:58:17 GMT 2012

Rank 21 Aligned Residues 295

% Identity 11% Template c3ouzA_

PDB info PDB header:ligase Chain: A: PDB Molecule:biotin carboxylase; PDBTitle: crystal structure of biotin carboxylase-adp complex from campylobacter2 jejuni

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence	M	I	K	L	G	I	V	M	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	.	.	D	L	P	L	A
Query Conservation																																																																										.	.
Alig confidence									.	.	.	.	.	.	.	.																																																										.	.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence	I	K	S	I	L	I	A	N	.	.	.	.	.	.	.	.	R	G	E	I	A	L	R	A	L	R	T	I	K	E	X	G	K	K	A	I	C	V	Y	S	E	A	D	K	D	A	L	Y	L	K	Y	A	D	A	S	I	C	I	G	K	A	R	S	S	E	S	Y	L	N	I	P	A	I	I	A	A	A	E	I	A
Template Known Secondary structure									.	.	.	.	.	.	.	.															T	T									G	G	G	T	T		T					S	S									T	T	T	T	G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
	3	.	.	.	.	.	.	10									.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																						.																			.	.	.	.							.	.
Query SS confidence																																						.																			.	.	.	.							.	.
Query Sequence	D	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	N	K	.	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	.	.	V	T	R	N	K	A	Q	L	K	A	F	W
Query Conservation																																						.																			.	.	.	.							.	.
Alig confidence																.	.	.	.	.																		.																			.	.	.	.							.	.
Template Conservation																.	.	.	.	.
Template Sequence	E	A	D	A	I	F	P	G	Y	G	F	L	S	E	N	.	.	.	.	.	Q	N	F	V	E	I	C	A	K	H	N	I	K	F	I	G	P	S	V	E	A	X	N	L	X	S	D	K	S	K	A	K	Q	V	X	Q	R	A	G	V	P	V	I	P	G	S	D	G	A	L	A	G	A	E	A	A	K	K	L	A
Template Known Secondary structure	T		S						S	S	T	T	T	T		.	.	.	.	.										T	T				S	S											S											T	T			B		S	B		S	S	S			S
Template Predicted Secondary structure																.	.	.	.	.
Template SS confidence
	75	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

	152	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure					.																																	.	.	.	.																												.
Query SS confidence					.																																	.	.	.	.																												.
Query Sequence	E	K	H	S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	.	.	.	.	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	.	D	G	E	P	V	P	Y	C	L	A	R
Query Conservation					.																																	.	.	.	.																												.
Alig confidence					.																																	.	.	.	.																												.
Template Conservation
Template Sequence	K	E	I	G	Y	P	V	I	L	K	A	A	A	G	G	G	G	R	G	X	R	V	V	E	N	E	K	D	L	E	K	A	Y	W	S	A	E	S	E	A	X	T	A	F	G	D	G	T	X	Y	X	E	K	Y	I	Q	N	P	R	H	I	E	V	Q	V	I	G	D	S	F	G	N	V	I	H	V	G	E	R	D
Template Known Secondary structure					S	S						T	T			T	T		S						S	G	G	G																	S											S	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																		.																																				.	.	.
Query SS confidence																		.																																				.	.	.
Query Sequence	I	P	Q	G	G	E	T	R	G	N	L	A	A	G	G	R	G	.	E	P	R	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	G	D	.	.	.	R	L	T	E	I	N	V	T	S	P	T	C	I	R	E	I	E	A	E	F	P	V	S	I
Query Conservation																		.																																				.	.	.
Alig confidence																		.																																				.	.	.
Template Conservation
Template Sequence	C	S	X	Q	R	R	H	Q	K	L	I	E	E	S	P	A	I	L	L	D	E	K	T	R	T	R	L	H	E	T	A	I	K	A	A	K	A	I	G	Y	E	G	A	G	T	F	E	F	L	V	D	K	N	L	D	F	Y	F	I	E	X	N	T	R	L	Q	V	E	H	C	V	S	E	X	V	S	G	I	D	I
Template Known Secondary structure						T	T								S		T	T	S																			T	T													T	T										S	S			T	T
Template Predicted Secondary structure
Template SS confidence
	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

	302	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	G	M	L	M	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	E	Q	X	I	K	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	310	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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