Job Description P04425 Confidence 99.92% Date Thu Jan 5 10:58:17 GMT 2012 Rank 30 Aligned Residues 289 % Identity 18% Template c3lwbA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	L	G	I	V	M	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D	L	D
Query Conservation
Alig confidence									.	.	.	.																												.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.																												.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	V	A	V	V	F	.	.	.	.	G	G	A	I	S	C	V	S	A	G	S	I	L	R	N	L	D	S	R	R	F	D	V	I	A	V	G	.	.	.	.	I	T	P	A	G	S	W	V	L	T	D	A	N	V	S	L	P	P	G	A	G	E	V	L	.	.	.	.	.	.	.	.	.	.	E	S	V	D
Template Known Secondary structure									.	.	.	.																S		T	T	T								.	.	.	.			T	T														T	T						.	.	.	.	.	.	.	.	.	.		T		S
Template Predicted Secondary structure									.	.	.	.																												.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.											.	70	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																		.																					.	.	.	.											.	.	.
Query SS confidence																																		.																					.	.	.	.											.	.	.
Query Sequence		V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	.	.	.	K	A	Q	L	K	A	F	W	E	K
Query Conservation																																		.																					.	.	.	.											.	.	.
Alig confidence																	.	.	.	.														.																					.	.	.	.											.	.	.
Template Conservation																	.	.	.	.
Template Sequence		V	V	F	P	V	L	H	G	P	Y	G	E	D	G	T	.	.	.	.	I	Q	G	L	L	E	L	A	G	V	P	Y	V	G	A	G	V	L	A	S	A	V	G	M	D	K	E	F	T	K	K	L	L	A	A	D	G	L	P	V	G	A	Y	A	V	L	R	P	P	R	S	T	L	H	R	Q	E	C	E	R	L
Template Known Secondary structure										T	T						.	.	.	.									T			B	S	S	S										B											T	T			B								T	T
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		H	S	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	.	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	G	E	T
Query Conservation																																																															.
Alig confidence																																					.	.															.										.
Template Conservation																																					.	.															.
Template Sequence		G	L	P	V	F	V	K	P	A	R	G	G	S	S	I	G	V	S	R	V	S	S	W	D	Q	L	P	A	A	V	A	R	A	R	R	.	.	H	D	P	K	V	I	V	E	A	A	I	S	G	R	.	E	L	E	C	G	V	L	E	M	P	D	G	T	L	E	A	S	T	L	G	E	I	R	V	A	G	V	R
Template Known Secondary structure			S							S	B		S	T	T	T	T						S	G	G	G										T	.	.	T		S	S											.										T	T	S														S	T	T
Template Predicted Secondary structure																																					.	.															.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		233	.	.	.	.												.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.					290	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																.																	.								.	.	.	.															.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.																.																	.								.	.	.	.															.	.	.	.
Query Sequence		R	G	N	L	A	.	.	.	.	.	.	.	.	.	.	.	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	.	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	.	F	V	G	L	D	I	I	.	.	.	.	G	D	R	L	T	E	I	N	V	T	S	P	T	C	.	.	.	.	I	R
Query Conservation							.	.	.	.	.	.	.	.	.	.	.																.																	.								.	.	.	.															.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.																.																	.								.	.	.	.															.	.	.	.
Template Conservation
Template Sequence		G	R	E	D	S	F	Y	D	F	A	T	K	Y	L	D	D	A	A	E	L	D	V	P	A	K	V	D	D	Q	V	A	E	A	I	R	Q	L	A	I	R	A	F	A	A	I	D	C	R	G	L	A	R	V	D	F	F	L	T	D	D	G	P	V	I	N	E	I	N	T	M	P	G	F	T	T	I	S	M	Y	P
Template Known Secondary structure			S			S	S	S							T		T	T					S	S																						T	T			S										T	T									S	S				S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E	A	R	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	M	W	A	A	S	G	V	D	Y	P	T	L	L	A	T	M	I	E	T	T	L	A	R
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions