Job Description P04425 Confidence 99.86% Date Thu Jan 5 10:58:17 GMT 2012 Rank 49 Aligned Residues 292 % Identity 12% Template c3k3pA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of the apo form of d-alanine:d-alanine ligase (ddl)2 from streptococcus mutans Resolution 2.23 Å

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		3	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure								.																																	.
Query SS confidence								.																																	.
Query Sequence		K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	.	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D	L
Query Conservation								.																																	.
Alig confidence								.																																	.
Template Conservation
Template Sequence		T	L	V	L	L	Y	G	G	R	S	A	E	R	D	V	S	V	L	S	A	E	S	V	M	R	A	I	N	Y	D	N	F	L	V	K	T	Y	F	I	T	Q	A	G	D	F	I	K	T	Q	E	F	D	S	Q	P	S	D	K	L	M	T	N	D	T	I	I	A	S	Q	K	I	K	P	S	D	I	Y	E	E	E
Template Known Secondary structure										S	S	T	T															S		T	T	T										T	T	S									S	S									T	T	S			G	G	G				G	G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.						.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																			.																					.	.	.	.	.
Query SS confidence																																			.																					.	.	.	.	.
Query Sequence		D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L	K	A	F	W	E	K	H
Query Conservation																																			.																					.	.	.	.	.
Alig confidence						.	.	.	.																										.																					.	.	.	.	.
Template Conservation						.	.	.	.
Template Sequence		A	V	V	F	.	.	.	.	P	V	L	H	G	P	M	G	E	D	G	S	I	Q	G	F	L	E	V	L	K	M	P	Y	V	G	T	N	I	L	S	S	S	V	A	M	D	K	I	T	T	N	Q	V	L	E	S	A	T	T	I	P	Q	V	A	Y	V	A	L	I	E	G	E	P	L	E	S	K	L	A	E	V
Template Known Secondary structure						.	.	.	.					S	T	T	T	S	S	S									T	T			B	S	S																											B								T	T	S
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		87	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	G	E	T	R	G
Query Conservation
Alig confidence		.																																			.	.											.	.	.																				.	.	.	.	.	.	.
Template Conservation		.																																			.	.											.	.	.																				.	.	.	.	.	.	.
Template Sequence		.	E	E	K	L	I	Y	P	V	F	V	K	P	A	N	I	S	K	A	E	N	R	T	D	L	K	Q	A	I	A	L	A	L	K	Y	.	.	D	S	R	V	L	I	E	Q	G	V	.	.	.	D	A	R	E	I	E	V	G	I	L	G	N	T	D	V	K	T	T	L	.	.	.	.	.	.	.	P	G	E	I
Template Known Secondary structure		.						S	S												S	S															.	.		S									.	.	.		S										S	S	S						.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																			.	.											.	.	.																				.	.	.	.	.	.	.
Template SS confidence
			163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.								.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.							.	.
Query SS confidence																																													.	.	.	.	.							.	.
Query Sequence		N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	.	.	V	T	S	P	T	C	I	R	E	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D
Query Conservation																																													.	.	.	.	.							.	.
Alig confidence																																		.	.										.	.	.	.	.							.	.
Template Conservation																																		.	.
Template Sequence		V	T	M	A	I	P	A	E	I	D	P	V	I	V	E	K	M	R	D	Y	A	A	T	A	F	R	T	L	G	C	C	G	.	.	L	S	R	C	D	F	F	L	T	E	D	G	K	V	Y	L	N	E	L	N	T	M	P	G	F	T	S	M	Y	P	L	L	W	E	N	M	G	L	S	Y	S	V	L	I	E	E
Template Known Secondary structure						S	S																						T	T				.	.										T	T										S	S														T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		308	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	E	A	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	S	L	A	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions