Job Description P04425 Confidence 99.92% Date Thu Jan 5 10:58:17 GMT 2012 Rank 29 Aligned Residues 296 % Identity 14% Template c3e5nA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 Resolution 2.00 Å

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		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure									.																																																																				.	.	.	.	.
Query SS confidence									.																																																																				.	.	.	.	.
Query Sequence		I	K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	.	.	.	.	.
Query Conservation									.																																																																				.	.	.	.	.
Alig confidence									.																																																																				.	.	.	.	.
Template Conservation
Template Sequence		I	R	V	G	L	I	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	R	N	I	L	D	A	L	D	P	Q	R	F	E	P	V	L	I	G	I	D	K	Q	G	Q	W	H	V	N	D	P	D	S	F	L	L	H	A	D	D	P	A	R	I	A	L	H	R	S	G	R	G	V	A	L	L	P	G	A	Q
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S							G	G	G	S			S	T	T		T	T	T														T	T		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
											76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																							.																					.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																							.																					.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	P	L	A	D	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T
Query Conservation		.	.	.	.	.	.	.	.	.																																							.																					.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.										.	.	.	.																										.																					.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		Q	Q	Q	L	R	P	I	Q	Q	A	L	A	Q	I	D	V	V	F	.	.	.	.	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	L	L	R	M	A	N	L	P	F	V	G	S	G	V	L	G	S	A	V	A	M	D	K	D	M	A	K	R	V	L	R	D	A	R	L	A	V	A	P	F	V	C	F
Template Known Secondary structure		S	S													S				.	.	.	.					S					S	S									T	T			B	S	S											B											T	T			B
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		142	.	.	.	.					.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.
Predicted Secondary structure							.	.	.	.										.																																																												.
Query SS confidence							.	.	.	.										.																																																												.
Query Sequence		R	N	K	A	Q	.	.	.	.	L	K	A	F	W	E	K	H	S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	.	D
Query Conservation							.	.	.	.										.																																																												.
Alig confidence							.	.	.	.										.																																		.	.												.	.	.											.
Template Conservation																																																						.	.												.	.	.
Template Sequence		D	R	H	T	A	A	H	A	D	V	D	T	L	I	A	Q	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	Q	V	R	T	A	D	A	F	A	A	A	L	A	L	A	L	A	.	.	Y	D	H	K	V	L	V	E	A	A	V	.	.	.	A	G	R	E	I	E	C	A	V	L	G	N
Template Known Secondary structure							T	T												S	S						S	B	S		S	S	T	T						S	G	G	G									T	T	.	.	T		S									.	.	.		S										S
Template Predicted Secondary structure																																																						.	.												.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.					.
Predicted Secondary structure																																																																.	.	.	.	.									.	.	.	.
Query SS confidence																																																																.	.	.	.	.									.	.	.	.
Query Sequence		G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	G	E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	V	T	.	.	.	.	S
Query Conservation																																																																.	.	.	.	.									.	.	.	.
Alig confidence												.	.	.	.	.	.	.																																			.	.										.	.	.	.	.									.	.	.	.
Template Conservation												.	.	.	.	.	.	.																																			.	.
Template Sequence		A	V	P	H	A	S	V	C	G	E	.	.	.	.	.	.	.	V	V	V	E	I	V	I	P	A	D	I	D	A	Q	T	Q	Q	R	I	Q	Q	I	A	V	Q	A	Y	Q	A	L	G	C	A	G	.	.	M	A	R	V	D	V	F	L	C	A	D	G	R	I	V	I	N	E	V	N	T	L	P	G	F	T	R
Template Known Secondary structure		S	S									.	.	.	.	.	.	.							S	S		S	S																				T			S	.	.										T	T										S	S				S	T
Template Predicted Secondary structure												.	.	.	.	.	.	.																																			.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	C	I	R	E	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E	A	R	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	V	Y	P	K	L	W	Q	A	S	G	L	D	Y	R	G	L	I	T	R	L	I	E	L	A	L	E	R
Template Known Secondary structure		T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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