Job Description P04425 Confidence 99.90% Date Thu Jan 5 10:58:17 GMT 2012 Rank 38 Aligned Residues 299 % Identity 12% Template c2zdqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine:d-alanine ligase with atp2 and d-alanine:d-alanine from thermus thermophius hb8 Resolution 2.30 Å

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		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		I	K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D	L
Query Conservation									.
Alig confidence									.																																		.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		M	R	V	L	L	I	A	G	G	V	S	P	E	H	E	V	S	L	L	S	A	E	G	V	L	R	H	I	P	F	P	T	D	L	A	V	I	A	Q	D	G	.	.	.	.	.	.	R	W	L	L	G	E	K	A	L	T	A	L	E	A	K	A	A	P	E	G	E	H	P	F	P	P	P	L	S	W	E	R	Y
Template Known Secondary structure											S	S	T	T																S	S									T	T	S	.	.	.	.	.	.					T									T	S						S	B		S	S					G	G	G
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																			.																					.	.	.	.
Query SS confidence																																			.																					.	.	.	.
Query Sequence		D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L	K	A	F	W	E	K	H	S
Query Conservation																																			.																					.	.	.	.
Alig confidence						.	.	.	.																										.																					.	.	.	.																	.	.
Template Conservation						.	.	.	.																																																																			.	.
Template Sequence		D	V	V	F	.	.	.	.	P	L	L	H	G	R	F	G	E	D	G	T	V	Q	G	F	L	E	L	L	G	K	P	Y	V	G	A	G	V	A	A	S	A	L	C	M	D	K	D	L	S	K	R	V	L	A	Q	A	G	V	P	V	V	P	W	V	A	V	R	K	G	E	P	P	V	V	.	.	P	F	D	P
Template Known Secondary structure		S				.	.	.	.					S	T	T	T	T	S	S										T			B	S	S																						T	T											T	T	S					.	.		S		S
Template Predicted Secondary structure						.	.	.	.																																																																			.	.
Template SS confidence
		75	.	.	.					.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	G	E	T	R	G	.
Query Conservation																																																																																	.
Alig confidence																																				.	.																																												.
Template Conservation																																				.	.
Template Sequence		P	F	F	V	K	P	A	N	T	G	S	S	V	G	I	S	R	V	E	R	F	Q	D	L	E	A	A	L	A	L	A	F	R	Y	.	.	D	E	K	A	V	V	E	K	A	L	S	P	V	R	E	L	E	V	G	V	L	G	N	V	F	G	E	A	S	P	V	G	E	V	R	Y	E	A	P	F	Y	D	Y	E
Template Known Secondary structure								T	T			T	T	T	T						S	G	G	G									T	T	T	.	.		S									S	S										S	S	S	S												S	S	S	S	S
Template Predicted Secondary structure																																				.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
					235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure		.	.	.																			.																	.								.	.	.	.													.	.	.	.
Query SS confidence		.	.	.																			.																	.								.	.	.	.													.	.	.	.
Query Sequence		.	.	.	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	.	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	.	F	V	G	L	D	I	I	.	.	.	.	G	D	R	L	T	E	I	N	V	T	S	P	.	.	.	.	T	C	I	R	E	I	E	A	E	F	P	V	S	I
Query Conservation		.	.	.																			.																	.								.	.	.	.													.	.	.	.
Alig confidence		.	.	.																			.																	.								.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		T	K	Y	T	P	G	R	A	E	L	L	I	P	A	P	L	D	P	G	T	Q	E	T	V	Q	E	L	A	L	K	A	Y	K	V	L	G	V	R	G	M	A	R	V	D	F	F	L	A	E	G	E	L	Y	L	N	E	L	N	T	I	P	G	F	T	P	T	S	M	Y	P	R	L	F	E	A	G	G	V	A	Y
Template Known Secondary structure					S	T	T	S	S				S	S																							T			S										T	T									S	S				S	T	T		S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	M	L	M	D	A	I	E	A	R	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	L	L	R	R	L	V	E	L	A	L	T
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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