Job Description P04425 Confidence 99.93% Date Thu Jan 5 10:58:17 GMT 2012 Rank 19 Aligned Residues 284 % Identity 18% Template c2yyaB_ PDB info PDB header:ligase Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of gar synthetase from aquifex aeolicus Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		I	K	L	G	I	V	M	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	.	.	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D
Query Conservation																															.	.
Alig confidence									.	.	.	.	.	.	.	.															.	.										.	.	.	.	.																															.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																										.	.	.	.	.																															.	.	.	.	.
Template Sequence		M	K	V	L	V	V	G	.	.	.	.	.	.	.	.	N	G	G	R	E	H	A	I	A	W	K	V	A	Q	S	P	L	V	K	E	L	Y	V	A	K	.	.	.	.	.	G	N	A	G	I	W	E	I	A	K	R	V	D	I	S	P	T	D	V	E	K	L	A	E	F	A	K	N	E	G	.	.	.	.	.
Template Known Secondary structure									.	.	.	.	.	.	.	.		S											T	T	S	T	T		S						S	.	.	.	.	.			T	T	G	G	G	T	S					S		T	T													T	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																										.	.	.	.	.																															.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.									.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																				.																					.	.	.	.
Query SS confidence																																				.																					.	.	.	.
Query Sequence		L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L	K	A	F	W	E	K	H
Query Conservation																																				.																					.	.	.	.
Alig confidence								.	.	.	.	.	.																							.																					.	.	.	.
Template Conservation								.	.	.	.	.	.
Template Sequence		V	D	F	T	I	V	.	.	.	.	.	.	G	P	E	A	P	L	V	E	G	I	V	D	E	F	E	K	R	G	L	K	I	F	G	P	N	K	E	A	A	K	L	E	G	S	K	A	F	A	K	T	F	M	K	K	Y	G	I	P	T	A	R	Y	E	V	F	T	D	F	E	K	A	K	E	Y	V	E	K	V
Template Known Secondary structure			S					.	.	.	.	.	.		S	S					T	T								T	T					S			T	T	T	T																	T			B							S										T	T	T
Template Predicted Secondary structure								.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.							.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		155		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																																				.	.	.	.																																							.
Query SS confidence			.																																				.	.	.	.																																							.
Query Sequence		S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	.	.	.	.	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	.
Query Conservation			.																																				.	.	.	.																																							.
Alig confidence			.																																				.	.	.	.												.																											.
Template Conservation																																																						.
Template Sequence		G	A	P	I	V	V	K	A	D	G	L	A	A	G	K	G	A	V	V	C	E	T	V	E	K	A	I	E	T	L	D	R	F	L	N	K	K	I	F	G	K	S	S	E	R	V	V	I	E	E	F	L	.	E	G	E	E	A	S	Y	I	V	M	I	N	G	D	R	Y	V	P	L	P	T	S	Q	D	H	K	R
Template Known Secondary structure			S	S						S	S		S	T	T								S													T	S			S	T	T	T	S	S	S								.													T	T								B
Template Predicted Secondary structure																																																						.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
				229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.							.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.
Predicted Secondary structure		.	.																				.	.	.	.	.	.																										.	.	.				.	.	.	.															.
Query SS confidence		.	.																				.	.	.	.	.	.																										.	.	.				.	.	.	.															.
Query Sequence		.	.	G	G	E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	.	.	.	.	.	.	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	.	.	.	D	I	I	.	.	.	.	G	D	R	L	T	E	I	N	V	T	S	P	T	C	.	I	R	E
Query Conservation		.	.																				.	.	.	.	.	.																										.	.	.				.	.	.	.															.
Alig confidence		.	.																				.	.	.	.	.	.																										.	.	.				.	.	.	.															.
Template Conservation
Template Sequence		L	L	D	E	D	K	G	P	N	T	G	G	M	G	A	Y	S	P	T	P	V	I	N	E	E	V	E	K	R	I	R	E	E	I	V	E	R	V	I	K	G	L	K	E	E	G	I	Y	Y	R	G	F	L	Y	A	G	L	M	I	T	K	E	G	P	K	V	L	E	F	N	V	R	L	G	D	P	E	A	Q	P
Template Known Secondary structure				T	T	T						S		S					S		T	T	S												T											T	T															T	T									S	S			T	T	T
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	M	R	V	K	N	D	F	L	E	T	L	L	N	F	Y	E
Template Known Secondary structure					T	B		S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions