 |
Job Description | P04425 | Confidence | 58.82% | Date | Thu Jan 5 10:58:17 GMT 2012 |
Rank | 145 | Aligned Residues | 81 |
% Identity | 16% | Template | c2w37A_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:ornithine carbamoyltransferase, catabolic; |
PDBTitle: crystal structure of the hexameric catabolic ornithine2 transcarbamylase from lactobacillus hilgardii
|
Resolution | 2.10 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | G | I | V | M | D | P | I | A | N | I | N | I | K | K | D | S | S | F | A | M | L | L | E | A | Q | R | R | G | Y | E | L | H | Y | M | E | M | G | D | L | Y | L | I | N | G | E | A | R | A | H | T | R | T | L | N | V | K | Q | N | Y | E | E | W | F | S | F | V | G | E | Q | D | L | P | L | A | D | L | D | V |
Query Conservation |   |
  |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
| . | . | . | . | . |   |
|
|
|
|
|
|
|   |
|
|
|   |
|   |   |   |
|
|
|   |   |   |   |
|   |   |   |   |
|
|   |   |
|
|
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |
|
|
|   |
|   |
|   |
Template Sequence |   |
N | I | A | L | L | F | . |
. |
. |
. |
. |
E | K | S | S | T | R | T | R | S | A | F | T | T | A | S | I | D | L | G | A | H | P | E | Y | L | G | Q | N | D | I | Q | L | G | K | K | E | S | T | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | T | A | K | V | L | G | S | M | F | D | G |
Template Known Secondary structure |   |
 |  |  |  |  |  | . | . | . | . | . | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| T | T | T |
|
| T | T | T | S | S |
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
| S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
53 | . | . | . | . | . | |
|
|
|
|
. | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 100 | . | . | . | . | . | . | . | . | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | L | M | R | K | D | P | P | F | D | T | E | F | I | Y | A | T | Y | I | L | E | R | A | E | E | K | G | T | L | I | V | N |
Query Conservation |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |
|   |   |
|   |
|
|
|
|
|
Template Sequence |   |
I | E | F | R | G | F | K | Q | S | . |
. |
. |
. |
. |
. |
. |
. |
D | A | E | I | L | A | R | D | S | G | V | P | V | W | N |
Template Known Secondary structure |   |
 |  |  |  | S | S |
|  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | S | S | S |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
110 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|