Phyre 2 alignment of P04425 with c2vpqA

Job Description P04425
Confidence 99.92% Date Thu Jan 5 10:58:17 GMT 2012

Rank 27 Aligned Residues 293

% Identity 10% Template c2vpqA_

PDB info PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase; PDBTitle: crystal structure of biotin carboxylase from s. aureus2 complexed with amppnp

Resolution 2.1 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence	K	L	G	I	V	M	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	.	.	D	L	P	L	A	D	L
Query Conservation																																																																								.	.
Alig confidence							.	.	.	.	.	.	.	.																																																										.	.
Template Conservation							.	.	.	.	.	.	.	.
Template Sequence	K	V	L	I	A	N	.	.	.	.	.	.	.	.	R	G	E	I	A	V	R	I	I	R	A	C	R	D	L	G	I	Q	T	V	A	I	Y	S	E	G	D	K	D	A	L	H	T	Q	I	A	D	E	A	Y	C	V	G	P	T	L	S	K	D	S	Y	L	N	I	P	N	I	L	S	I	A	T	S	T	G	C
Template Known Secondary structure							.	.	.	.	.	.	.	.															T	T									G	G	G	T	T							S	S								S	S	G	G	G	T	T	T												T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.
Template SS confidence
	3	.	.	.	.	.									.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																				.																			.	.	.	.							.	.
Query SS confidence																																				.																			.	.	.	.							.	.
Query Sequence	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	N	K	.	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	.	.	V	T	R	N	K	A	Q	L	K	A	F	W	E	K
Query Conservation																																				.																			.	.	.	.							.	.
Alig confidence														.	.	.	.	.																		.																			.	.	.	.							.	.
Template Conservation														.	.	.	.	.
Template Sequence	D	G	V	H	P	G	Y	G	F	L	A	E	N	.	.	.	.	.	A	D	F	A	E	L	C	E	A	C	Q	L	K	F	I	G	P	S	Y	Q	S	I	Q	K	M	G	I	K	D	V	A	K	A	E	M	I	K	A	N	V	P	V	V	P	G	S	D	G	L	M	K	D	V	S	E	A	K	K	I	A	K	K
Template Known Secondary structure	S						S	S	T	T	T	T		.	.	.	.	.									T	T	T				S	S	S										S											T	T			B		S	B		S	S		B	S
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
	75	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

	154	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure			.																																			.	.	.	.																												.
Query SS confidence			.																																			.	.	.	.																												.
Query Sequence	H	S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	.	.	.	.	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	.	E	P	V	P	Y	C	L	A	R	I	P
Query Conservation			.																																			.	.	.	.																												.
Alig confidence			.																																			.	.	.	.																												.
Template Conservation
Template Sequence	I	G	Y	P	V	I	I	K	A	T	A	G	G	G	G	K	G	I	R	V	A	R	D	E	K	E	L	E	T	G	F	R	M	T	E	Q	E	A	Q	T	A	F	G	N	G	G	L	Y	M	E	K	F	I	E	N	F	R	H	I	E	I	Q	I	V	G	D	S	Y	G	N	V	I	H	L	G	E	R	D	C	T
Template Known Secondary structure			S	S						T	T			T	T		S					S	S																				S												S												T	T	S
Template Predicted Secondary structure
Template SS confidence
	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

	228	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure															.																																					.	.	.	.
Query SS confidence															.																																					.	.	.	.
Query Sequence	Q	G	G	E	T	R	G	N	L	A	A	G	G	R	.	G	E	P	R	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	G	D	.	.	.	.	R	L	T	E	I	N	V	T	S	P	T	C	I	R	E	I	E	A	E	F	P	V	S	I	T
Query Conservation															.																																					.	.	.	.
Alig confidence															.																																					.	.	.	.
Template Conservation
Template Sequence	I	Q	R	R	M	Q	K	L	V	E	E	A	P	S	P	I	L	D	D	E	T	R	R	E	M	G	N	A	A	V	R	A	A	K	A	V	N	Y	E	N	A	G	T	I	E	F	I	Y	D	L	N	D	N	K	F	Y	F	M	E	M	N	T	R	I	Q	V	E	H	P	V	T	E	M	V	T	G	I	D	L	V
Template Known Secondary structure				T	T								S		T	T																				T	T													T	T	T	T										S			T	T
Template Predicted Secondary structure
Template SS confidence
	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

	303	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	M	L	M	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	L	Q	L	Q	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	310	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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