Job Description P04425 Confidence 99.70% Date Thu Jan 5 10:58:17 GMT 2012 Rank 67 Aligned Residues 276 % Identity 16% Template c2r85B_ PDB info PDB header:unknown function Chain: B: PDB Molecule:purp protein pf1517; PDBTitle: crystal structure of purp from pyrococcus furiosus complexed with amp Resolution 1.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		I	K	L	G	I	V	M	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	.	.	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D
Query Conservation																																							.	.
Alig confidence								.	.	.	.	.	.	.																									.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	V	R	I	A	.	.	.	.	.	.	.	T	Y	A	S	H	S	A	L	Q	I	L	K	G	A	K	D	E	G	F	E	T	I	A	F	G	S	S	K	V	K	P	L	Y	T	K	Y	F	P	V	A	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	F	I	E	E	K	Y	P	E	E	E	L	L	N
Template Known Secondary structure								.	.	.	.	.	.	.			S	S	T	T											T	T							S		G	G	G						T	T	S				S		.	.	.	.	.	.	.	.	.	.	.	.				S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.								.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.													.	50	.	.	.	.	.	.	.	.	.	60	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L	K	A	F	W	E	K	H	S
Query Conservation																																																								.	.	.	.
Alig confidence							.	.	.	.	.	.																																												.	.	.	.							.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.
Template Sequence		L	N	A	V	V	.	.	.	.	.	.	V	P	T	G	S	F	V	A	H	L	G	I	E	L	V	E	N	M	K	V	P	Y	F	G	N	K	R	V	L	R	W	E	S	D	R	N	L	E	R	K	W	L	K	K	A	G	I	R	V	P	E	V	Y	.	.	.	.	.	.	.	.	.	E	D	P	D	D	I	E
Template Known Secondary structure		T	T				.	.	.	.	.	.				T	T												T		S	S		B	B	S		T	T							S											T	T						B		.	.	.	.	.	.	.	.	.	S	S	G	G	G
Template Predicted Secondary structure							.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.							.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.										120	.	.	.	.	.	.
			156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																		.	.	.																																										.	.
Query SS confidence		.																																		.	.	.																																										.	.
Query Sequence		.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	.	.	.	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	.	.
Query Conservation		.																																		.	.	.																																										.	.
Alig confidence		.							.	.	.	.	.																							.	.	.																																										.	.
Template Conservation									.	.	.	.	.
Template Sequence		K	P	V	I	V	K	P	.	.	.	.	.	G	K	G	Y	F	L	A	K	D	P	E	D	F	W	R	K	A	E	K	F	L	G	I	K	R	K	E	D	L	K	N	I	Q	I	Q	E	Y	V	L	G	V	P	V	Y	P	H	Y	F	Y	S	K	V	R	E	E	L	E	L	M	S	I	D	R	R	Y	E	S	N
Template Known Secondary structure		S							.	.	.	.	.		T	T					S	S												T				S	S	T	T		S	S																				T	T	T	T
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.						.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
																	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.		.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																				.	.			.											.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																				.	.			.											.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	.	.	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	.	.	G	L	.	I	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																				.	.			.											.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																				.	.			.											.	.	.	.	.
Template Conservation
Template Sequence		V	D	A	I	G	R	I	P	A	K	D	Q	L	E	F	D	M	D	I	T	Y	T	V	I	G	N	I	P	I	V	L	R	E	S	L	L	M	D	V	I	E	A	G	E	R	V	V	K	A	A	E	E	L	M	G	G	L	W	G	P	F	C	L	E	G	V	F	T	P	D	L	E	F	V	V	F	E	I	S	A
Template Known Secondary structure		G	G	G	G	G	G	S							T	S																		G	G	G																			S	S														T	T	S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		285	.	.	.	.										290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.
Query Sequence		T	S	P	T	C	.	.	.	.	.	.	.	.	.	I	R	E	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E	A	R	L	Q	Q	Q
Query Conservation							.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	V	A	G	T	N	I	F	V	N	G	S	P	Y	T	W	L	R	Y	D	R	P	V	S	T	G	R	R	I	A	M	E	I	R	E	A	I	E	N	D
Template Known Secondary structure		S			G	G	G	G	G	G	T	T			T	T	G	G	G	T		S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions