Job Description P04425 Confidence 78.33% Date Thu Jan 5 10:58:17 GMT 2012 Rank 115 Aligned Residues 226 % Identity 16% Template c2pbzC_ PDB info PDB header:ligase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of an imp biosynthesis protein purp from2 thermococcus kodakaraensis Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	S	H	S	S	L	Q	I	L	L	G	A	K	K	E	G	F	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	Y	V	S	P	K	R	R	P	F	Y	S	S	L	P	I	V	D	D	L	V	V	A	E	E	X	T	S	I	L	N	D	D	G	I	V	V	P	H	G	S
Template Known Secondary structure			S	S	T	T											T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T						T		T	T		S						S		S			T	T			S	S	B				B	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.																			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	L	.	.	T	P	E	T	L	V	T	R	N	K	A	Q	L	K	A	F	W	E	K	H	S	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V
Query Conservation																																									.	.
Alig confidence																																									.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	A	Y	L	G	I	E	A	I	E	K	A	K	A	R	F	F	G	N	R	R	F	L	K	W	E	T	T	F	E	L	Q	D	K	A	L	E	G	A	G	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	E	V	V	E	P	E	D	A	K	P	D	E	L	Y	F	V	R
Template Known Secondary structure						S							T			S			B	S		S	S	G	G	G	G	G	S												T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B			B			S					S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.								.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																											.	.	.																		.	.	.	.	.	.	.
Query SS confidence																																											.	.	.																		.	.	.	.	.	.	.
Query Sequence		K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	.	.	.	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	G	E	.	.	.	.	.	.	.	T	R	G	N	L	A	A	G	G	R	G	E
Query Conservation																																											.	.	.																		.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																	.										.	.	.																		.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.																	.
Template Sequence		I	E	G	S	E	L	.	.	.	.	.	.	.	.	.	E	E	R	L	S	P	Y	R	V	E	R	F	I	P	G	V	.	Y	L	Y	V	H	F	F	Y	S	P	I	L	E	R	L	E	L	L	G	V	D	E	R	V	L	I	A	D	G	N	A	R	W	P	V	K	P	L	P	Y	T	I	V	G	N	R	A	I
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	S														S		.										T	T	T	T													T	T		S	S	S	S	S			S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		132	.	.	.	.	.										.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		244	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.							.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.																					.	.	.	.	.	.													.	.	.
Query SS confidence				.	.																					.	.	.	.	.	.													.	.	.
Query Sequence		P	R	.	.	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	.	.	.	.	.	.	G	L	I	F	V	G	L	D	I	I	G	D	.	.	.	R	L	T	E	I	N	V	T	S	P	T	C
Query Conservation				.	.																					.	.	.	.	.	.													.	.	.
Alig confidence				.	.																					.	.	.	.	.	.				.	.								.	.	.
Template Conservation																																			.	.
Template Sequence		A	L	R	E	S	L	L	P	Q	L	Y	D	Y	G	L	A	F	V	R	T	X	R	E	L	E	P	P	G	V	I	G	P	F	.	.	A	L	H	F	A	Y	D	G	S	F	K	A	I	G	I	A	S	R	I	D	G	G
Template Known Secondary structure					G	G	G																			S	T	T				S			.	.							S	S	S								S	S	B		S	G
Template Predicted Secondary structure																																			.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions