Job Description P04425 Confidence 99.91% Date Thu Jan 5 10:58:17 GMT 2012 Rank 34 Aligned Residues 225 % Identity 15% Template c2ip4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8 Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																					.																					.	.	.	.
Query SS confidence																																					.																					.	.	.	.
Query Sequence		D	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L	K	A	F	W	E	K
Query Conservation																																					.																					.	.	.	.
Alig confidence									.	.	.	.	.	.																							.																					.	.	.	.
Template Conservation									.	.	.	.	.	.
Template Sequence		G	I	D	L	T	L	V	.	.	.	.	.	.	G	P	E	A	P	L	V	E	G	I	A	D	A	F	Q	A	R	G	L	L	L	F	G	P	T	Q	K	A	A	X	I	E	G	S	K	A	F	A	K	G	L	X	E	R	Y	G	I	P	T	A	R	Y	R	V	F	R	E	P	L	E	A	L	A	Y	L	E	E
Template Known Secondary structure		T							.	.	.	.	.	.		S	S					T	T									T					S																						T				B							S	S
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.							.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		154	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.
Predicted Secondary structure				.																																																																										.	.	.
Query SS confidence				.																																																																										.	.	.
Query Sequence		H	S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	.	.	.	G
Query Conservation				.																																																																										.	.	.
Alig confidence				.																																																.																										.	.	.
Template Conservation																																																				.
Template Sequence		V	G	V	P	V	V	V	K	D	S	G	L	A	A	G	K	G	V	T	V	A	F	D	L	H	Q	A	K	Q	A	V	A	N	I	L	N	R	A	E	G	G	E	V	V	V	E	E	Y	L	E	.	G	E	E	A	T	V	L	A	L	T	D	G	E	T	I	L	P	L	L	P	S	Q	D	H	K	R	L	L	D
Template Known Secondary structure				S	S						T	T	S		S	S	T	T					S													T	T	S	S	S												.	S										S	S	S								B								T
Template Predicted Secondary structure																																																				.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.																						.	.	.				.	.	.	.															.
Query SS confidence																								.	.	.	.	.																						.	.	.				.	.	.	.															.
Query Sequence		G	E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	.	.	.	.	.	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	.	.	.	D	I	I	.	.	.	.	G	D	R	L	T	E	I	N	V	T	S	P	T	C	.	I	R	E	I	E	A	E
Query Conservation																								.	.	.	.	.																						.	.	.				.	.	.	.															.
Alig confidence																								.	.	.	.	.																						.	.	.				.	.	.	.															.
Template Conservation
Template Sequence		G	D	Q	G	P	X	T	G	G	X	G	A	V	A	P	Y	P	X	D	E	A	T	L	R	R	V	E	E	E	I	L	G	P	L	V	R	G	L	R	A	E	G	V	V	Y	R	G	V	V	Y	A	G	L	X	L	T	R	E	G	P	K	V	L	E	F	N	A	R	F	G	D	P	E	A	Q	A	L	L	P	L
Template Known Secondary structure		T	T						S		S					S															T											T	T															S	S									S	S			T	T						T	T	T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	V	S	I	T	G	M	L	M	D	A	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	N	D	L	V	E	L	A	L	R	V	A	E
Template Known Secondary structure		B		S
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions