Phyre 2 alignment of P04425 with c2i80B

Job Description P04425
Confidence 99.91% Date Thu Jan 5 10:58:17 GMT 2012

Rank 33 Aligned Residues 299

% Identity 15% Template c2i80B_

PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies

Resolution 2.19 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure							.																																.	.	.	.	.
Query SS confidence							.																																.	.	.	.	.
Query Sequence	K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	.	.	.	.	.	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P
Query Conservation							.																																.	.	.	.	.
Alig confidence							.																																.	.	.	.	.
Template Conservation
Template Sequence	N	I	C	I	V	F	G	G	K	S	A	E	H	E	V	S	I	L	T	A	Q	N	V	L	N	A	I	D	K	D	K	Y	H	V	D	I	I	Y	I	T	N	D	G	D	W	R	K	Q	N	N	I	T	A	E	I	K	S	T	D	E	L	H	L	E	N	G	E	A	L	E	I	S	Q	L	L	K	E	S	S	S
Template Known Secondary structure									S	S	T	T															S		T	T	T										T	T	S										S					G	G	G	G	S		S					S										T	T
Template Predicted Secondary structure
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.								.	.
Predicted Secondary structure																																						.																					.	.	.	.										.	.	.	.	.	.	.
Query SS confidence																																						.																					.	.	.	.										.	.	.	.	.	.	.
Query Sequence	L	A	D	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	.	.	.	.	.	.	.	N	K
Query Conservation																																						.																					.	.	.	.										.	.	.	.	.	.	.
Alig confidence									.	.	.	.																										.																					.	.	.	.										.	.	.	.	.	.	.
Template Conservation									.	.	.	.
Template Sequence	G	Q	P	Y	D	A	V	F	.	.	.	.	P	L	L	H	G	P	N	G	E	D	G	T	I	Q	G	L	F	E	V	L	D	V	P	Y	V	G	N	G	V	L	S	A	A	S	S	M	D	K	L	V	M	K	Q	L	F	E	H	R	G	L	P	Q	L	P	Y	I	S	F	L	R	S	E	Y	E	K	Y	E	H
Template Known Secondary structure	S	S			S				.	.	.	.			S		B	T	T	T	B	S	S										T			B	S	S																							T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
	85	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	145	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence	A	Q	L	K	A	F	W	E	K	H	S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L
Query Conservation												.
Alig confidence												.																																			.	.											.	.	.																			.
Template Conservation																																															.	.											.	.	.																			.
Template Sequence	N	I	L	K	L	V	N	D	K	L	N	Y	P	V	F	V	K	P	A	N	L	G	S	S	V	G	I	S	K	C	N	N	E	A	E	L	K	E	G	I	K	E	A	F	Q	F	.	.	D	R	K	L	V	I	E	Q	G	V	.	.	.	N	A	R	E	I	E	V	A	V	L	G	N	D	Y	P	E	A	T	.
Template Known Secondary structure												S	S						T	T		S	S		T	T					S	S													T	T	.	.		S									.	.	.												S	S	S					.
Template Predicted Secondary structure																																															.	.											.	.	.																			.
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.	.					.	.	.	290	.	.
Predicted Secondary structure																														.																	.										.	.	.	.	.										.	.	.	.
Query SS confidence																														.																	.										.	.	.	.	.										.	.	.	.
Query Sequence	A	R	I	P	Q	G	G	E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	.	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	.	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	V	T	S	.	.	.	.	P	T	C	I	R	E
Query Conservation																														.																	.										.	.	.	.	.										.	.	.	.
Alig confidence	.	.	.	.																										.																	.										.	.	.	.	.										.	.	.	.
Template Conservation	.	.	.	.
Template Sequence	.	.	.	.	W	P	G	E	V	V	K	D	V	A	F	V	Q	L	Q	I	P	A	D	L	D	E	D	V	Q	L	T	L	R	N	M	A	L	E	A	F	K	A	T	D	C	S	G	L	V	R	A	D	F	F	V	T	E	D	N	Q	I	Y	I	N	E	T	N	A	M	P	G	F	T	A	F	S	M	Y	P	K
Template Known Secondary structure	.	.	.	.								S	S							S	S		S																				T	T													T	T										S	S				S	T	T	S
Template Predicted Secondary structure	.	.	.	.
Template SS confidence
					235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

	293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E	A	R	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	W	E	N	M	G	L	S	Y	P	E	L	I	T	K	L	I	E	L	A	K	E	R
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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