Phyre 2 alignment of P04425 with c2dlnA

Job Description P04425
Confidence 99.92% Date Thu Jan 5 10:58:17 GMT 2012

Rank 25 Aligned Residues 274

% Identity 14% Template c2dlnA_

PDB info PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	M	I	K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D
Query Conservation									.
Alig confidence									.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	T	D	K	I	A	V	L	L	G	G	T	S	A	E	R	E	V	S	L	N	S	G	A	A	V	L	A	G	L	R	E	G	G	I	D	A	Y	P	V	D	P	K	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	T	Q	L	K	S	M	G
Template Known Secondary structure		S									S	S	T	T																		T	T								T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	S	G	G	G	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																												.	.	.	.	50	.	.	.	.

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																					.	.	.	.																.	.	.	.	.	.
Query SS confidence																																			.																					.	.	.	.																.	.	.	.	.	.
Query Sequence	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L	K	.	.	.	.	.	.
Query Conservation																																			.																					.	.	.	.																.	.	.	.	.	.
Alig confidence																.	.	.	.																.																					.	.	.	.																.	.	.	.	.	.
Template Conservation																.	.	.	.
Template Sequence	F	Q	K	V	F	I	A	L	H	G	R	G	G	E	D	.	.	.	.	G	T	L	Q	G	M	L	E	L	M	G	L	P	Y	T	G	S	G	V	M	A	S	A	L	S	M	D	K	L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T	R	A	E	F	E	K	G	L	S	D	K	Q
Template Known Secondary structure										S	T	T	T	S	S	.	.	.	.											T			B	S	S																						T	T			B													S				T	T	T
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
	55	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130

		149	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure	.								.
Query SS confidence	.								.
Query Sequence	.	A	F	W	E	K	H	S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I
Query Conservation	.								.
Alig confidence	.								.																																			.	.											.	.	.
Template Conservation																																												.	.											.	.	.
Template Sequence	L	A	E	I	S	A	L	G	L	P	V	I	V	K	P	S	R	E	G	S	S	V	G	M	S	K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q	H	.	.	D	E	E	V	L	I	E	K	W	L	.	.	.	S	G	P	E	F	T	V	A	I	L	G	E	E	I	L	P	S	I	R	I	Q	P
Template Known Secondary structure						T	T		S	S						S	S			T	T	T	T					S	S	G	G	G										T	T	.	.		S									.	.	.		S									T	T
Template Predicted Secondary structure																																												.	.											.	.	.
Template SS confidence
	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

	227	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.					.	.	.	.	290	.	.
Predicted Secondary structure						.																.	.	.																							.										.	.	.	.	.									.	.	.	.
Query SS confidence						.																.	.	.																							.										.	.	.	.	.									.	.	.	.
Query Sequence	P	Q	G	G	E	.	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	.	.	.	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	.	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	V	T	.	.	.	.	S	P	T	C	I	R	E
Query Conservation						.																.	.	.																							.										.	.	.	.	.									.	.	.	.
Alig confidence						.																.	.	.																							.										.	.	.	.	.									.	.	.	.
Template Conservation
Template Sequence	S	G	T	F	Y	D	Y	E	A	K	Y	L	S	D	E	T	Q	Y	F	C	P	A	G	L	E	A	S	Q	E	A	N	L	Q	A	L	V	L	K	A	W	T	T	L	G	C	K	G	W	G	R	I	D	V	M	L	D	S	D	G	Q	F	Y	L	L	E	A	N	T	S	P	G	M	T	S	H	S	L	V	P	M
Template Known Secondary structure	S	S	S	S								S		S						S	S					T	T																	T			S										T	T	S									S	S				S	T	T
Template Predicted Secondary structure
Template SS confidence
	206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

	293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	A	R	Q	A	G	M	S	F	S	Q	L	V	V	R	I	L	E
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
	286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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