Job Description P04425 Confidence 99.93% Date Thu Jan 5 10:58:17 GMT 2012 Rank 22 Aligned Residues 269 % Identity 15% Template c1vkzA_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of phosphoribosylamine--glycine ligase (tm1250) from2 thermotoga maritima at 2.30 a resolution Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	L	G	I	V	M	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D	L	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	V	H	I	L	G	.	.	.	.	.	.	.	.	S	G	G	R	E	H	A	I	G	W	A	F	A	K	Q	G	Y	E	V	H	F	Y	P	G	N	A	G	T	K	R	D	G	T	N	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	E	G	E	K	T	L	K	A	I	P	E	E	D
Template Known Secondary structure									.	.	.	.	.	.	.	.		S													T	T										T	T	G	G	G	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T						T	S		S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10									.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																		.																					.	.	.	.																							.
Query SS confidence																																		.																					.	.	.	.																							.
Query Sequence		V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L	K	A	F	W	E	K	H	S	.
Query Conservation																																		.																					.	.	.	.																							.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																					.	.	.	.																							.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	E	E	F	L	V	E	R	S	N	V	F	G	P	V	K	E	V	A	R	L	E	G	S	K	V	Y	A	K	R	F	X	K	K	Y	G	I	R	T	A	R	F	E	V	A	E	T	P	E	E	L	R	E	K	I	K	K	F	S	P
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	G	G	G	T				T	T	B	S	S																						T	T										S	S									T	T	S		S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.																.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.																																									.	.	.
Query SS confidence																																			.	.	.	.																																									.	.	.
Query Sequence		D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	.	.	.	.	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	.	.	.
Query Conservation																																			.	.	.	.																																									.	.	.
Alig confidence																																			.	.	.	.															.																										.	.	.
Template Conservation																																																					.
Template Sequence		P	Y	V	I	K	A	D	G	L	A	R	G	K	G	V	L	I	L	D	S	K	E	E	T	I	E	K	G	S	K	L	I	I	G	E	L	I	K	G	V	K	G	P	V	V	I	D	E	F	L	A	.	G	N	E	L	S	A	X	A	V	V	N	G	R	N	F	V	I	L	P	F	V	R	D	Y	K	R	L	X
Template Known Secondary structure		S						S	S			S	S							S	S														T	S	S	S	T	T			S										.	S											T	T
Template Predicted Secondary structure																																																					.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.																								.	.	.				.	.	.	.															.
Query SS confidence																							.	.	.	.																								.	.	.				.	.	.	.															.
Query Sequence		G	G	E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	.	.	.	.	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	.	.	.	D	I	I	.	.	.	.	G	D	R	L	T	E	I	N	V	T	S	P	T	C	.	I	R	E	I	E	A	E
Query Conservation																							.	.	.	.																								.	.	.				.	.	.	.															.
Alig confidence																							.	.	.	.																								.	.	.				.	.	.	.															.
Template Conservation
Template Sequence		D	G	D	R	G	P	N	T	G	G	X	G	S	W	G	P	V	E	I	P	S	D	T	I	K	K	I	E	E	L	F	D	K	T	L	W	G	V	E	K	E	G	Y	A	Y	R	G	F	L	Y	L	G	L	X	L	H	D	G	D	P	Y	I	L	E	Y	N	V	R	L	G	D	P	E	T	E	V	I	V	T	L
Template Known Secondary structure		T	T	T						S		S																														T	T															T	T									S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	V	S	I	T	G	M	L	M	D	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	E	G	F	V	N	A	V	L	E	G	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions