Job Description P04425 Confidence 99.97% Date Thu Jan 5 10:58:17 GMT 2012 Rank 3 Aligned Residues 240 % Identity 22% Template c1uc8B_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:lysine biosynthesis enzyme; PDBTitle: crystal structure of a lysine biosynthesis enzyme, lysx,2 from thermus thermophilus hb8 Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	I	V	M	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E	Q	D	L	P	L	A	D	L	D	V	I
Query Conservation
Alig confidence												.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	I	L	Y	D	R	I	R	P	.	.	.	.	.	.	D	E	R	M	L	F	E	R	A	E	A	L	G	L	P	Y	K	K	V	Y	V	P	A	L	P	M	V	L	G	E	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	L	E	G	V	T	V	A
Template Known Secondary structure							S	S				.	.	.	.	.	.													T								G	G	G				B	T	T	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T	T
Template Predicted Secondary structure												.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.							.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																								.	.	.	.	.	.	50	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																				.	.	.	.																							.
Query SS confidence																																																				.	.	.	.																							.
Query Sequence		L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L	K	A	F	W	E	K	H	S	.	D	I	I
Query Conservation																																																				.	.	.	.																							.
Alig confidence					.	.	.	.	.																																											.	.	.	.																							.
Template Conservation					.	.	.	.	.
Template Sequence		L	E	R	.	.	.	.	.	C	V	S	Q	S	R	G	L	A	A	A	R	Y	L	T	A	L	G	I	P	V	V	N	R	P	E	V	I	E	A	C	G	D	K	W	A	T	S	V	A	L	A	K	A	G	L	P	Q	P	K	T	A	L	A	T	D	R	E	E	A	L	R	L	M	E	A	F	G	Y	P	V	V
Template Known Secondary structure					.	.	.	.	.		S	S														T	T					S																					T	T										S	S													S	S
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		53	.	.						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	G	E	T	R	G	N	L	A	A
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.													.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.													.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	P	V	I	X	X	X	X	X	X	X	X	X	X	X	X	G	F	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	F	Y	I	Q	E	Y	V	E	K	P	.	G	R	D	I	R	V	F	V	V	G	E	R	A	I	A	A	I	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								B		S										T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T											S	.	S									T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.													.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.														.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		G	G	R	G	E	P	R	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	.	.	.	.	G	D	R	L	T	E	I	N	V	T	S	P	T	C	I	R	E	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E	A	R	L
Query Conservation																																							.	.	.	.
Alig confidence		.	.	.																						.	.	.											.	.	.	.											.	.
Template Conservation		.	.	.																						.	.	.																									.	.
Template Sequence		.	.	.	A	E	N	C	P	L	T	E	E	V	A	R	L	S	V	K	A	A	E	A	V	.	.	.	G	G	G	V	V	A	V	D	L	F	E	S	E	R	G	L	L	V	N	E	V	N	H	T	.	.	M	E	F	K	N	S	V	H	T	T	G	V	D	I	P	G	E	I	L	K	Y	A	W	S	L	A
Template Known Secondary structure		.	.	.																					T	.	.	.	T		S										T	T									T	T	.	.				T	T																				T
Template Predicted Secondary structure		.	.	.																						.	.	.																									.	.
Template SS confidence
					209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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