Job Description P04425 Confidence 99.97% Date Thu Jan 5 10:58:17 GMT 2012 Rank 4 Aligned Residues 225 % Identity 15% Template c1i7nA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain Resolution 1.90 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.
Predicted Secondary structure																																																								.	.	.	.												.	.	.	.
Query SS confidence																																																								.	.	.	.												.	.	.	.
Query Sequence		L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	.	.	.	.	A	Q	L	K	A	F	W
Query Conservation																																																								.	.	.	.												.	.	.	.
Alig confidence																																																								.	.	.	.												.	.	.	.
Template Conservation
Template Sequence		P	D	F	V	L	I	R	Q	H	A	F	G	M	A	E	N	E	D	F	R	H	L	V	I	G	M	Q	Y	A	G	L	P	S	I	N	S	L	E	S	I	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	A	I	F	K	T	L	G	G	E	K	F	P	L	I	E	Q	T	Y	Y	P	N	H	R	E	M	L
Template Known Secondary structure			S						S					S	S	T	T													T	T					S								T	S	S																	T	T	T	S		B							S	S	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		152	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		E	K	H	S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I	P	Q	G	G
Query Conservation						.
Alig confidence						.																																			.	.												.	.																			.	.
Template Conservation																																									.	.												.	.																			.	.
Template Sequence		T	L	P	T	F	P	V	V	V	K	I	G	H	A	H	S	G	M	G	K	V	K	V	E	N	H	Y	D	F	Q	D	I	A	S	V	V	A	L	T	.	.	Q	T	Y	A	T	A	E	P	F	I	D	.	.	A	K	Y	D	I	R	V	Q	K	I	G	N	N	Y	K	A	Y	M	.	.	R	T	S	I	S	G
Template Known Secondary structure		S				S	S						S	S		S	T	T	T	T						S															.	.	T											.	.											T	T							.	.			S	S		T
Template Predicted Secondary structure																																									.	.												.	.																			.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	V	T	S	P	T	C	I	R	E	I	E	A	E	F	P	V	S	I	T	G	M	L
Query Conservation																																																	.	.	.	.	.
Alig confidence									.																										.	.													.	.	.	.	.
Template Conservation									.																										.	.
Template Sequence		N	W	K	T	N	T	G	.	S	A	M	L	E	Q	I	A	M	S	D	R	Y	K	L	W	V	D	A	C	S	E	M	F	G	.	.	G	L	D	I	C	A	V	K	A	V	H	G	K	D	G	K	D	Y	I	F	E	V	M	D	C	S	M	P	L	I	G	E	H	Q	V	E	D	R	Q	L	I	T	D	L	V
Template Known Secondary structure		T	T	S		S			.		S	S																		T	T	G	G	G	.	.			S										T	T	S										T	T					S	S
Template Predicted Secondary structure									.																										.	.
Template SS confidence
		335	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		306	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	A	I	E	A	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	K	M	N	Q	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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