Phyre 2 alignment of P04425 with c1ehiB

Job Description P04425
Confidence 99.90% Date Thu Jan 5 10:58:17 GMT 2012

Rank 36 Aligned Residues 297

% Identity 11% Template c1ehiB_

PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine:d-lactate ligase; PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides

Resolution 2.38 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.											40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure							.																									.								.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																									.								.	.	.	.	.	.	.	.	.	.
Query Sequence	K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	.	Y	E	L	H	Y	M	E	.	.	.	.	.	.	.	.	.	.	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V
Query Conservation							.																									.								.	.	.	.	.	.	.	.	.	.
Alig confidence							.																									.								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	V	A	L	I	F	G	G	N	S	S	E	H	D	V	S	K	R	S	A	Q	N	F	Y	N	A	I	E	A	T	G	K	Y	E	I	I	V	F	A	I	A	Q	N	G	F	F	L	D	T	E	S	S	K	K	I	L	A	L	E	D	E	Q	P	I	V	D	A	F	M	K	T	V	D	A	S	D	P	L	A	R
Template Known Secondary structure									S	S	T	T																	T	T	S	S										T	T	S													T	T												T	T			T	T		T	T
Template Predicted Secondary structure
Template SS confidence
	405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.

	71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																												.																					.	.	.	.
Query SS confidence																																												.																					.	.	.	.
Query Sequence	G	E	Q	D	L	P	L	A	D	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A
Query Conservation																																												.																					.	.	.	.
Alig confidence															.	.	.	.																										.																					.	.	.	.
Template Conservation															.	.	.	.
Template Sequence	I	H	A	L	K	S	A	G	D	F	D	I	F	F	.	.	.	.	P	V	V	H	G	N	L	G	E	D	G	T	L	Q	G	L	F	K	L	L	D	K	P	Y	V	G	A	P	L	R	G	H	A	V	S	F	D	K	A	L	T	K	E	L	L	T	V	N	G	I	R	N	T	K	Y	I	V	V	D	P	E	S
Template Known Secondary structure			T	T	S	T	T				S				.	.	.	.				T	T	T	T	T	S	S	S									T	T			B	S	S											S											T	T											T	T	G
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
	485	.	.	.	.	490	.	.	.	.	.	.	.	.					.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560

					146	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure	.	.	.	.											.
Query SS confidence	.	.	.	.											.
Query Sequence	.	.	.	.	Q	L	K	A	F	W	E	K	H	S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P
Query Conservation	.	.	.	.											.
Alig confidence	.	.	.	.											.																																		.	.
Template Conservation																																																	.	.
Template Sequence	A	N	N	W	S	W	D	K	I	V	A	E	L	G	N	I	V	F	V	K	A	A	N	Q	G	S	S	V	G	I	S	R	V	T	N	A	E	E	Y	T	E	A	L	S	D	S	F	Q	.	.	Y	D	Y	K	V	L	I	E	E	A	V	N	G	A	R	E	L	E	V	G	V	I	G	N	D	Q	P	L	V	S
Template Known Secondary structure	G	G	G										T		S							S	S			S	S	T	T						S												T	T	.	.	T		S																					S	S	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
	561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.			.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.

	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.	.					.	.	.	290	.
Predicted Secondary structure																																																										.	.	.	.	.										.	.	.	.
Query SS confidence																																																										.	.	.	.	.										.	.	.	.
Query Sequence	Y	C	L	A	R	I	P	Q	G	G	E	T	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	I	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	V	T	S	.	.	.	.	P	T	C	I	R
Query Conservation																																																										.	.	.	.	.										.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																															.	.										.	.	.	.	.										.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																															.	.
Template Sequence	E	I	G	A	H	T	V	H	.	.	.	.	.	.	.	.	F	Q	I	P	A	Q	L	S	P	E	V	T	K	E	V	K	Q	M	A	L	D	A	Y	K	V	L	N	L	R	G	.	.	E	A	R	M	D	F	L	L	D	E	N	N	V	P	Y	L	G	E	P	N	T	L	P	G	F	T	N	M	S	L	F	K
Template Known Secondary structure									.	.	.	.	.	.	.	.			S	S																						T	T				.	.										T	T										S	S				S	T	T	S	G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																															.	.
Template SS confidence
	639	640	.	.	.	.	.	.									.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.			.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.

	292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E	A	R	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	L	W	D	Y	S	D	I	N	N	A	K	L	V	D	M	L	I	D	Y	G	F	E	D
Template Known Secondary structure	T	T	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	731	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions