Phyre 2 alignment of P04425 with c1e4eB

Job Description P04425
Confidence 99.91% Date Thu Jan 5 10:58:17 GMT 2012

Rank 35 Aligned Residues 303

% Identity 15% Template c1e4eB_

PDB info PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase

Resolution 2.5 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.									40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure								.																																.	.	.	.	.	.	.	.
Query SS confidence								.																																.	.	.	.	.	.	.	.
Query Sequence	I	K	L	G	I	V	M	.	D	P	I	A	N	I	N	I	K	K	D	S	S	F	A	M	L	L	E	A	Q	R	R	G	Y	E	L	H	Y	M	E	.	.	.	.	.	.	.	.	M	G	D	L	Y	L	I	N	G	E	A	R	A	H	T	R	T	L	N	V	K	Q	N	Y	E	E	W	F	S	F	V	G	E
Query Conservation								.																																.	.	.	.	.	.	.	.
Alig confidence								.																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	K	V	A	I	L	F	G	G	C	S	E	E	H	D	V	S	V	K	S	A	I	E	I	A	A	N	I	N	K	E	K	Y	E	P	L	Y	I	G	I	T	K	S	G	V	W	K	M	C	E	K	P	C	A	E	W	E	N	E	N	C	Y	S	A	V	L	S	P	D	K	K	M	H	G	L	L	V	K	K	N
Template Known Secondary structure										S	S	T	T													T	T	S		T	T	T										T	T	S						S	S		S	T	T				T	T										T	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																										.																					.	.	.	.
Query SS confidence																																										.																					.	.	.	.
Query Sequence	Q	D	L	P	L	A	D	L	D	V	I	L	M	R	K	D	P	P	F	D	T	E	F	I	Y	A	T	Y	I	L	E	R	A	E	E	K	G	T	L	I	V	.	N	K	P	Q	S	L	R	D	C	N	E	K	L	F	T	A	W	F	S	D	.	.	.	.	L	T	P	E	T	L	V	T	R	N	K	A	Q	L
Query Conservation																																										.																					.	.	.	.
Alig confidence													.	.	.	.																										.																					.	.	.	.
Template Conservation													.	.	.	.
Template Sequence	H	E	Y	E	I	N	H	V	D	V	A	F	.	.	.	.	S	A	L	H	G	K	S	G	E	D	G	S	I	Q	G	L	F	E	L	S	G	I	P	F	V	G	C	D	I	Q	S	S	A	I	C	M	D	K	S	L	T	Y	I	V	A	K	N	A	G	I	A	T	P	A	F	W	V	I	N	K	D	D	R	P
Template Known Secondary structure	S	S							S				.	.	.	.					S	T	T	T	T	S	S										T			B	S	S											S											T	T											S	S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.

	148	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	K	A	F	W	E	K	H	S	.	D	I	I	L	K	P	L	D	G	M	G	G	A	S	I	F	R	V	K	E	G	D	P	N	L	G	V	I	A	E	T	L	T	E	H	G	T	R	Y	C	M	A	Q	N	Y	L	P	A	I	K	D	G	D	K	R	V	L	V	V	D	G	E	P	V	P	Y	C	L	A	R	I
Query Conservation									.
Alig confidence	.	.							.																																		.	.													.
Template Conservation	.	.																																									.	.													.
Template Sequence	.	.	V	A	A	T	F	T	Y	P	V	F	V	K	P	A	R	S	G	S	S	F	G	V	K	K	V	N	S	A	D	E	L	D	Y	A	I	E	S	A	R	Q	.	.	Y	D	S	K	I	L	I	E	Q	A	V	S	.	G	C	E	V	G	C	A	V	L	G	N	S	A	A	L	V	V	G	E	V	D	Q	I
Template Known Secondary structure	.	.		G	G	G	S		S	S						S	S			T	T	T	T						S	G	G	G									T	T	.	.	T		S	S									.	S											T	T
Template Predicted Secondary structure	.	.																																									.	.													.
Template SS confidence
			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

	227	.	.	230	.	.										.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.																					.																.											.	.	.	.	.											.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.																					.																.											.	.	.	.	.											.	.	.
Query Sequence	P	Q	G	G	E	T	.	.	.	.	.	.	.	.	.	R	G	N	L	A	A	G	G	R	G	E	P	R	P	L	T	E	S	D	W	.	K	I	A	R	Q	I	G	P	T	L	K	E	K	G	L	.	I	F	V	G	L	D	I	I	G	D	.	.	.	.	.	R	L	T	E	I	N	V	T	S	P	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.																					.																.											.	.	.	.	.											.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.																					.																.											.	.	.	.	.											.	.	.
Template Conservation
Template Sequence	R	L	Q	Y	G	I	F	R	I	H	Q	E	V	E	P	E	K	G	S	E	N	A	V	I	T	V	P	A	D	L	S	A	E	E	R	G	R	I	Q	E	T	V	K	K	I	Y	K	T	L	G	C	R	G	L	A	R	V	D	M	F	L	Q	D	R	G	R	I	V	L	N	E	V	N	T	L	P	G	F	T	S
Template Known Secondary structure			S	S	S				G	G	G	S	S	S	G	G	G			S	S					S	S		S	S																			T	T													T	T										S	S				S	T
Template Predicted Secondary structure
Template SS confidence
	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	T	C	I	R	E	I	E	A	E	F	P	V	S	I	T	G	M	L	M	D	A	I	E	A	R	L
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	Y	S	R	Y	P	R	M	M	A	A	A	G	I	S	L	P	E	L	I	D	R	L	I	V	L	A	L
Template Known Secondary structure	T										T	T
Template Predicted Secondary structure
Template SS confidence
	315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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