Job Description P0AA82 Confidence 92.89% Date Thu Jan 5 11:12:10 GMT 2012 Rank 6 Aligned Residues 296 % Identity 10% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.										.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.																							.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.																							.	.	.
Query Sequence		L	I	G	N	L	L	L	G	I	Y	T	S	F	L	G	Y	I	G	A	K	T	G	L	T	T	H	L	L	A	R	F	.	.	.	.	.	.	.	.	.	S	F	G	V	K	G	S	W	L	P	S	L	L	L	G	G	T	Q	V	G	W	F	.	.	.	G	V	G	V	A	M	F	A	I	P	V	G	K	A	T
Query Conservation																																	.	.	.	.	.	.	.	.	.																							.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation
Template Sequence		P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F
Template Known Secondary structure																					T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		125	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.															.	.	.	.	180	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.																					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	D	.	.	.	.	.	I	N	L	L	I	A	V	S	G	L	L	M	T	V	T	V	F	F	G	I	.	S	A	L	T	V	L	S	V	I	A	V	P	A	I	A	C	L	G	G	Y	S	V	W	L	A	V	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	G	L	D	A	L	K	A
Query Conservation					.	.	.	.	.																					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y
Template Known Secondary structure		T				T																				S	S				T	T																																																T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.															.						.	.												.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.															.						.	.												.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	P	A	Q	P	L	D	F	N	V	A	L	A	L	V	.	V	G	S	F	I	S	A	G	T	L	T	A	D	F	.	V	R	F	G	R	.	.	N	A	K	L	A	V	L	V	A	M	V	.	A	F	F	L	G	N	S	L	M	F	I	F	G	A	A	G	A	A	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.															.						.	.												.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.															.						.	.												.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N
Template Known Secondary structure					S	S								T											T											T		S	S																																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.									.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.							.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.																															.	.	.	.	.	.									.	.
Query SS confidence																.	.	.	.	.	.	.	.																															.	.	.	.	.	.									.	.
Query Sequence		A	L	G	M	A	D	I	S	D	V	M	I	A	Q	.	.	.	.	.	.	.	.	G	L	L	L	P	A	I	V	V	L	G	L	N	I	W	T	T	N	D	N	A	L	Y	A	S	G	L	G	F	A	.	.	.	.	.	.	N	I	T	G	M	S	S	K	.	.	T	L	S	V	I	N	G	I	I	G	T	V
Query Conservation																.	.	.	.	.	.	.	.																															.	.	.	.	.	.									.	.
Alig confidence																.	.	.	.	.	.	.	.																															.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L
Template Known Secondary structure				G	G	G												T	S	S	S	T	T																												T	T	S		S	S	S	S	S		S	S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		C	A	L	W	L	Y	N	N	F	V	G	W	L	T	F	L	S	A	A	I	P	P	V	G	G	V	I	I	A	D	Y	L	M	N	.	R	R	R	Y	E	H
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure						S	S																																T
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions