Job Description P0AA82 Confidence 99.31% Date Thu Jan 5 11:12:10 GMT 2012 Rank 3 Aligned Residues 399 % Identity 13% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		15	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure						.																																																															.	.
Query SS confidence						.																																																															.	.
Query Sequence		S	A	R	K	.	G	V	L	A	L	T	F	V	M	L	G	L	T	F	F	S	A	S	M	W	T	G	G	T	L	G	T	G	L	S	Y	H	D	F	F	L	A	V	L	I	G	N	L	L	L	G	I	Y	T	S	F	L	G	Y	I	G	A	K	T	G	L	T	.	.	T	H	L	L	A	R	F	S	F	G	V
Query Conservation						.																																																															.	.
Alig confidence						.																											.																																				.	.
Template Conservation																																	.
Template Sequence		K	N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	.	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D
Template Known Secondary structure						B																		T	T	T	S						.				G	G	G																								T	T				T	T	T											S
Template Predicted Secondary structure																																	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		92		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure			.																																			.	.	.	.	.
Query SS confidence			.																																			.	.	.	.	.
Query Sequence		K	.	G	S	W	L	P	S	L	L	L	G	G	T	Q	V	G	W	F	G	V	G	V	A	M	F	A	I	P	V	G	K	A	T	G	L	.	.	.	.	.	D	I	N	L	L	I	A	V	S	G	L	L	M	T	V	T	V	F	F	G	I	S	A	L	T	V	L	S	V	I	A	V	P	A	I	A	C	L	G
Query Conservation			.																																			.	.	.	.	.
Alig confidence			.																																			.	.	.	.	.
Template Conservation
Template Sequence		N	I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L
Template Known Secondary structure		S																																	T	T																										T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	S	V	W	L	A	V	N	G	M	G	G	L	D	A	L	K	A	V	V	P	A	Q	P	L	D	F	N	V	A	L	A	L	V	V	G	S	F	I	S	A	G	T	L	T	A	D	F	V	R	F	G	R	N	A	K	L	A	V	L	V	A	M	V	A	F	F	L	G	N	S	L	M	F	I	F	G	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	F	I	F	A	G	L	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V	A	I	S
Template Known Secondary structure														G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		246	.	.	.	250	.	.	.	.	.												.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.														.	.	.	.	300	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	A	A	L	G	M	A	D	I	.	.	.	.	.	.	.	.	.	.	.	S	D	V	M	I	A	Q	G	L	L	L	P	A	I	V	V	L	G	L	N	I	W	T	T	N	D	N	A	L	Y	A	S	G	L	G	F	A	N	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	S	S	K	T
Query Conservation												.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K	S	T	E
Template Known Secondary structure				T	T	S								T	G	G	G																																			T	T	T											S	S			S	S			T	T	S			S		T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	V	I	N	G	I	I	G	T	V	C	A	L	W	L	Y	N	N	F	V	G	W	L	T	F	L	S	A	A	I	P	P	V	G	G	V	I	I	A	D	Y	L	M	N	R	R	R	Y	E	H	F	A	T	T	R	M	M	S	V	N	W	V	A	I	L	A	V	A	L	G	I	A	A	G	H	W	L	P	G
Query Conservation
Alig confidence																																		.
Template Conservation																																		.
Template Sequence		G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	.	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	I	V	I	F	S	F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	N	R	F	V
Template Known Secondary structure																	S																	.											T
Template Predicted Secondary structure																																		.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	P	V	N	A	V	L	G	G	A	L	S	Y	L	I	L	N	P	I	L	N	R	K	T	T	A	A	M	T	H	V	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N	M	Y	V	K	S
Template Known Secondary structure																													G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.