Job Description P0AA82 Confidence 53.00% Date Thu Jan 5 11:12:10 GMT 2012 Rank 9 Aligned Residues 303 % Identity 16% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.									.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		L	I	G	N	L	L	L	G	I	Y	T	S	F	L	G	Y	I	G	A	K	T	G	L	T	T	H	L	L	A	.	.	.	.	.	.	.	.	R	F	S	F	G	V	K	G	S	W	L	P	S	L	L	L	G	G	T	Q	V	G	W	.	.	.	F	G	V	G	V	A	M	F	A	I	P	V	G	K	A	T	G
Query Conservation																															.	.	.	.	.	.	.	.																								.	.	.
Alig confidence																															.	.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I
Template Known Secondary structure																			T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.														.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	I	N	L	L	I	A	V	S	G	L	L	M	T	V	T	V	F	F	.	.	.	.	.	.	.	.	G	I	S	A	L	T	V	L	S	V	I	A	V	P	A	I	A	C	L	G	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	W	L	A	V	N	G	M	G	G	L	D	A	L	K	A
Query Conservation																						.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A
Template Known Secondary structure																			T	T	G	G	G	T	T	S			S																								S																									T			T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		185	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250											.
Predicted Secondary structure										.									.																																										.										.	.	.	.	.	.	.	.	.	.
Query SS confidence										.									.																																										.										.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	P	A	Q	P	L	D	.	F	N	V	A	L	A	L	V	.	V	G	S	F	I	S	A	G	T	L	T	A	D	F	V	R	F	G	R	N	A	K	L	A	V	L	V	A	M	V	A	F	F	L	G	N	S	L	M	F	I	.	F	G	A	A	G	A	A	A	L	.	.	.	.	.	.	.	.	.	.	G
Query Conservation										.									.																																										.										.	.	.	.	.	.	.	.	.	.
Alig confidence										.									.																																										.										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G
Template Known Secondary structure		T	T	T	S	S								T	T										T	T												T	T	T																																				T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		252	.	.	.	.	.	.	.	260	.	.									.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure													.	.	.	.	.	.	.	.																																																											.	.	.
Query SS confidence													.	.	.	.	.	.	.	.																																																											.	.	.
Query Sequence		M	A	D	I	S	D	V	M	I	A	Q	.	.	.	.	.	.	.	.	G	L	L	L	P	A	I	V	V	L	G	L	N	I	W	T	T	N	D	N	A	L	Y	A	S	G	L	G	F	A	N	I	T	G	M	S	S	K	T	L	S	V	I	N	G	I	I	G	T	V	C	A	L	W	L	Y	N	N	.	.	.
Query Conservation													.	.	.	.	.	.	.	.																																																											.	.	.
Alig confidence													.	.	.	.	.	.	.	.																																																											.	.	.
Template Conservation
Template Sequence		D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D
Template Known Secondary structure		T	T		S										T	S	T	T																															T	T	T	T		S	S																									G	G
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
				321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																													.	.
Query SS confidence		.	.																													.	.
Query Sequence		.	.	F	V	G	W	L	T	F	L	S	A	A	I	P	P	V	G	G	V	I	I	A	D	Y	L	M	N	R	R	.	.	R	Y	E	H	F	A	T	T	R	M	M
Query Conservation		.	.																													.	.
Alig confidence		.	.																													.	.
Template Conservation
Template Sequence		N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E
Template Known Secondary structure		G																																	T
Template Predicted Secondary structure
Template SS confidence
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions