Job Description P0AA82 Confidence 100.00% Date Thu Jan 5 11:12:10 GMT 2012 Rank 1 Aligned Residues 415 % Identity 20% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		S	Q	D	N	N	F	S	Q	G	P	V	P	Q	S	A	R	K	.	G	V	L	A	L	T	F	V	M	L	G	L	T	F	F	S	A	S	M	W	T	G	G	T	L	G	T	G	L	S	Y	H	D	F	F	L	A	V	L	I	G	N	L	L	L	G	I	Y	T	S	F	L	G	Y	I	G	A	K	T	G	L	T
Query Conservation																			.
Alig confidence							.	.											.
Template Conservation							.	.
Template Sequence		L	L	N	P	S	.	.	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	I	N
Template Known Secondary structure					S	T	.	.	T	S				G	G	G			B															S	T										T	T	T	S																								T
Template Predicted Secondary structure							.	.
Template SS confidence
		12	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.						.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		T	H	L	L	A	R	F	S	F	G	V	K	G	S	W	L	P	S	L	L	L	G	G	T	Q	V	G	W	F	G	V	G	V	A	M	F	A	I	P	V	G	K	A	T	G	.	.	.	.	.	L	D	I	N	L	L	I	A	V	S	G	L	L	M	T	V	T	V	F	F	G	I	S	A	L	T	V	L	S	V
Query Conservation																																															.	.	.	.	.
Alig confidence																																															.	.	.	.	.
Template Conservation
Template Sequence		F	T	V	A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V
Template Known Secondary structure						T	T	T	T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																						.	.																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	V	P	A	I	A	C	L	G	G	Y	S	V	W	L	A	V	N	G	.	.	M	G	G	L	D	A	L	K	A	V	V	P	A	Q	P	L	D	F	N	V	A	L	A	L	V	V	G	S	F	I	S	A	G	T	L	T	A	D	F	V	R	F	G	R	N	A	K	L	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D
Template Known Secondary structure																							T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
				224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.								.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure		.	.																																								.	.	.	.	.	.	.
Query SS confidence		.	.																																								.	.	.	.	.	.	.
Query Sequence		.	.	A	V	L	V	A	M	V	A	F	F	L	G	N	S	L	M	F	I	F	G	A	A	G	A	A	A	L	G	M	A	D	I	S	D	V	M	I	A	Q	.	.	.	.	.	.	.	G	L	L	L	P	A	I	V	V	L	G	L	N	I	W	T	T	N	D	N	A	L	Y	A	S	G	L	G	F	A	N	I
Query Conservation		.	.																																								.	.	.	.	.	.	.
Alig confidence		.	.																																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T
Template Known Secondary structure																															S		S											T																				T	T						T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		295	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360									.	.	.
Predicted Secondary structure					.	.																			.																																														.	.	.	.	.	.	.	.
Query SS confidence					.	.																			.																																														.	.	.	.	.	.	.	.
Query Sequence		T	G	M	.	.	S	S	K	T	L	S	V	I	N	G	I	I	G	T	V	C	A	L	.	W	L	Y	N	N	F	V	G	W	L	T	F	L	S	A	A	I	P	P	V	G	G	V	I	I	A	D	Y	L	M	N	R	R	R	Y	E	H	F	A	T	T	R	M	M	S	.	.	.	.	.	.	.	.	V	N	W
Query Conservation					.	.																			.																																														.	.	.	.	.	.	.	.
Alig confidence					.	.																			.																																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	P	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W
Template Known Secondary structure		S	T	T	T																	T		G	G	G	T														T	T													T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	I	L	A	V	A	L	G	I	A	A	G	H	W	L	P	G	I	V	P	V	N	A	V	L	G	G	A	L	S	Y	L	I	L	N	P	I	L	N	R	K	T	T	A	A	M	T	H	V	E	A	N	S	V	E
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	.	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E	D
Template Known Secondary structure																T		G	G	G																					.	T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure																																									.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.