Job Description P39838 Confidence 85.73% Date Thu Jan 5 12:01:06 GMT 2012 Rank 235 Aligned Residues 227 % Identity 10% Template c3liaA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:hypothetical sensory transduction histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase mmhk1s-z2 Resolution 1.99 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	Y	Q	I	V	D	I	T	H	A	I	Q	K	R	V	D	N	W	R	Y	V	T	W	Q	I	Y	D	N	I	A	A	T	T	S	P	S	S	G	E	G	L	Q	E	T	R	L	K	Q	D	V	Y	Y	L	E	K	P	R	R	K	T	E	A	L	I	F	G	S	H	D	N	S	T	L	E	M	T	Q	R	M
Query Conservation
Alig confidence																																			.	.
Template Conservation																																			.	.
Template Sequence		A	Y	E	K	S	I	E	M	A	G	N	Y	A	N	Q	F	D	A	Q	M	E	A	N	Q	A	I	A	R	T	L	A	C	T	.	.	M	A	E	Y	G	S	Q	D	R	E	E	A	M	S	I	I	K	R	I	L	N	E	N	P	Q	L	I	G	V	Y	L	G	Y	E	P	D	A	F	D	G	R	D	K	N	Y
Template Known Secondary structure																																			.	.						S																		T	T		S								T	T	T	T	T	S		G	G	G
Template Predicted Secondary structure																																			.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	Y	L	D	T	L	W	G	A	E	N	V	P	W	S	M	Y	Y	L	N	G	Q	D	N	S	L	V	L	I	S	T	L	P	L	K	D	L	T	S	G	F	K	E	S	T	V	S	D	I	V	D	S	R	R	A	E	M	L	Q	Q	A	N	A	L	D	E	R	E	S	F	S	N	M	R	R	L	A	W	Q
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template Sequence		I	N	A	P	G	H	D	S	T	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	P	Y	C	N	K	I	N	G	P	V	I	I	E	P	L	V	H	Y	D	S	S	D	Y	Y	Q	L	P	K	T	T	G	K	D	T	L	T	E	P	Y	F	Y	.	.	E
Template Known Secondary structure		T	T		T	T			T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S									T	T	T												S										.	.	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.																								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	H	Y	F	T	L	R	T	T	F	N	Q	P	G	H	L	A	T	V	V	A	F	D	L	P	I	N	D	L	.	.	.	.	.	.	I	P	P	G	M	P	L	D	S	F	R	L	E	P	D	A	T	A	T	G	N	N	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	F	M	V	S	Y	D	S	P	I	F	K	N	G	E	F	A	G	I	A	G	V	D	V	P	L	E	Y	V	D	D	V	A	S	S	I	R	T	F	D	T	G	Y	A	F	M	V	S	N	T	G	I	F	L	S	H	P	T	Q	K	N	W	I	G	E	K	S	L	S	D	F	D	V	E	E	I	K	N	A
Template Known Secondary structure		T													T	T																				T	T			B	T	T	T	B							T	T		B	B	S			S	S		G	G	G	T	T	T		B	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
									263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	E	K	E	G	T	D	S	V	S	I	H	F	N	S	T	K	I	E	I	S	S	A	L	N	S	T	D	M	R	L	V	W	Q	V	P	Y	G	T	L	L
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	D	I	R	E	G	I	G	G	H	V	E	I	K	D	P	I	T	G	K	T	V	I	M	F	Y	E	P	V	K	T	G	D	F	S	F	V	L	V	V	P	K	E	E	M	L
Template Known Secondary structure							T	T										T	T	T	T											T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions