Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEE5
Confidence100.00%DateThu Jan 5 11:23:08 GMT 2012
Rank4Aligned Residues291
% Identity15%Templated1tjya_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60... ......70.........80.........90.........100.
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Query Sequence  AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND. SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIE
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Template Sequence  GSAERIAFIPKLVGVGFFTSGGNGAQEAGKAL. GIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK
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SSSSS.T



SS

TT
S

SSSSTT
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   25....30.........40.........50...... ...60.........70.........80.........90.........100...
 
   102.......110.........120.........130.........140.........150.........160.........170.........180.
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Query Sequence  KARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR
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Template Sequence  RAMQRGVKILTWDSDTKPECRSY. . . . YINQGTPKQLGSMLVEMAAHQVDKEKA. . . . . . . . . KVAFFYSSPTVTDQNQW
Template Known Secondary structure  TT
SS


GGG
S....S


SSS.........S
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   104.....110.........120...... ...130.........140.........150... ......160.........170
 
   182.......190.........200.........210.........220.........230.........240.........250.........260.
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Query Sequence  TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDAL
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Template Sequence  VKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAY. . PDLDAIIAPDANALPAAAQAAENLKRNNLAIVGFSTP
Template Known Secondary structure 
TT
TT

..SS


STTTT

S
B

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   171........180.........190.........200.........210. ........220.........230.........240........
 
   262.......270.........280.........290.........300.........310.. .......
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Query Sequence  PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK. . . . . . . . . . . . . . . . . . . . . . VVRVPYV
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Template Sequence  NVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVSPNSEQGYHYEAKGNGIVLLPERV
Template Known Secondary structure  TS
S

TT


STT
TTT
GGGGT




TT

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   249250.........260.........270.........280.........290.........300.........310.........320........
 
   320.........
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Query Sequence  GVDKDNLAEF
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Template Sequence  IFNKDNIDKY
Template Known Secondary structure  TTTGGG
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   329330........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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