Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 45 Aligned Residues 267 % Identity 18% Template d1jyea_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.70

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	.	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R
Query Conservation																																									.
Alig confidence																															.										.																															.
Template Conservation																															.																																									.
Template Sequence		L	L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	L	S	R	A	D	Q	L	.	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	T	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	.	Q	D	A	I	A	V	E	A	A
Template Known Secondary structure									S		T	T	S																	T	.	T										S	S	S													T	T	T		S						S					.
Template Predicted Secondary structure																															.																																									.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y
Query Conservation
Alig confidence																.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	T	N	V	P	A	L	F	L	D	V	S	D	Q	.	.	.	.	.	.	.	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G
Template Known Secondary structure		T	T	T	S					S	S	S		T	T	.	.	.	.	.	.	.	S	S	S																						T			S	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.													.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I	P	V	F	G	V	D	A	L	P	E	A
Query Conservation
Alig confidence															.	.																								.	.
Template Conservation															.	.																								.	.
Template Sequence		W	H	K	Y	L	T	R	N	Q	I	Q	P	I	.	.	A	E	R	E	G	D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	.	.	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T
Template Known Secondary structure									T	T				S	.	.							S	S														T	T	.	.				S					S	S														T	T			B	T	T	T	B					S	B
Template Predicted Secondary structure															.	.																								.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N	L
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.
Template Sequence		E	D	S	S	C	Y	I	P	P	L	T	T	I	K	Q	D	F	R	L	L	G	Q	T	S	V	D	R	L	L	Q	L	S	Q	G	Q	A	V	K	G	.	.	.	.	.	.	.	.	.	N	Q	L	L	P	V	S	L	V	K	R	K	T	T
Template Known Secondary structure		G	G	G	G	G	S	S	S			B																						T	T		S		S	S	.	.	.	.	.	.	.	.	.												S	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.										.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions