Job Description P0AEE5 Confidence 93.07% Date Thu Jan 5 11:23:08 GMT 2012 Rank 98 Aligned Residues 210 % Identity 10% Template c3sajB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain Resolution 2.50 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K
Query Conservation
Alig confidence																																																																				.
Template Conservation																																																																				.
Template Sequence		P	N	N	I	Q	I	G	G	L	F	P	N	Q	Q	S	Q	E	H	A	A	F	R	F	A	L	S	Q	L	T	E	P	P	K	L	L	P	Q	I	D	I	V	N	I	S	D	S	F	E	M	T	Y	R	F	C	S	Q	F	S	K	G	V	Y	A	I	F	G	.	F	Y	E	R	R	T	V	N	M	L	T	S	F
Template Known Secondary structure			S									S	S	S	S													T			S	S	S											T	T																T		S					.				T	T	T
Template Predicted Secondary structure																																																																				.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T
Query Conservation
Alig confidence																															.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template Conservation																															.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template Sequence		C	G	A	L	H	V	C	F	I	T	P	S	F	P	V	D	T	S	N	Q	F	V	L	Q	L	R	P	E	L	.	.	.	.	.	.	.	Q	E	A	L	I	S	I	I	D	H	Y	K	W	Q	.	.	.	.	.	.	.	.	.	.	.	.	T	F	V	Y	I	.	.	.	Y	D	A	D	R	G	L	S	V	L
Template Known Secondary structure						T							S				S	S			T	T					S				.	.	.	.	.	.	.												T			.	.	.	.	.	.	.	.	.	.	.	.						.	.	.							T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.								.	.	.	.	.	.	.	.	120	.	.	.	.	.													.	.	.	.	130				.	.	.	.	.	.	.	.	.	140
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I	P	V	F	G
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		Q	R	V	L	D	T	A	A	E	K	N	W	.	.	Q	V	T	A	V	N	I	L	T	T	T	E	E	G	Y	R	M	L	F	Q	D	L	E	K	K	K	E	R	L	V	V	V	D	C	E	S	E	R	L	N	A	I	L	G	Q	I	V	K	L	E	K	N	G	I	G	Y	H	Y	I	L	A
Template Known Secondary structure												T		.	.							T	T	T																S	S	S																						T	T		S	S	T	T
Template Predicted Secondary structure														.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions