Job Description P0AEE5 Confidence 99.72% Date Thu Jan 5 11:23:08 GMT 2012 Rank 71 Aligned Residues 238 % Identity 13% Template c3s99A_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak Resolution 2.05 Å

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		25	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure													.	.																						.	.
Query SS confidence													.	.																						.	.
Query Sequence		D	T	R	I	G	V	T	I	Y	K	Y	.	.	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	.	.	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I
Query Conservation													.	.																						.	.
Alig confidence													.	.																				.		.	.
Template Conservation																																		.
Template Sequence		K	L	K	V	G	F	I	Y	I	G	P	P	G	D	F	G	W	T	Y	Q	H	D	Q	A	R	K	E	L	V	E	A	L	.	G	D	K	V	E	T	T	F	L	E	N	V	A	E	G	A	D	A	E	R	S	I	K	R	I	A	R	A	G	N	K	L	I	F	T	T	S	F	G	Y	M	D	P	T	V	K	V
Template Known Secondary structure										S	S		G	G	G	S	S																	.	T	T	T								S			T	T													T	T		S						S	G	G	G
Template Predicted Secondary structure																																		.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A
Query Conservation
Alig confidence						.															.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation						.															.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		A	K	K	F	.	P	D	V	K	F	E	H	A	T	G	Y	K	T	A	.	.	.	.	.	.	D	N	M	S	A	Y	N	A	R	F	Y	E	G	R	Y	V	Q	G	V	I	A	A	K	M	S	K	K	G	.	.	.	.	.	.	.	.	.	.	.	I	A	G	Y	I	G	S	V	P	V	.	P	E	V	V	Q
Template Known Secondary structure			T	T		.	T	T	S						S					B	.	.	.	.	.	.	T	T																								S	S		.	.	.	.	.	.	.	.	.	.	.											.
Template Predicted Secondary structure						.															.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
		99	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.												.	.	.	.	.	150	.	.	.	.		.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	.	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I	P	V	F	G	V	D
Query Conservation																												.
Alig confidence																												.																.	.	.	.													.	.											.	.	.
Template Conservation																																												.	.	.	.													.	.											.	.	.
Template Sequence		G	I	N	S	F	M	L	G	A	Q	S	V	N	P	D	F	R	V	K	V	I	W	V	N	S	W	F	D	P	G	K	E	A	D	A	A	K	A	L	I	D	Q	.	.	.	.	G	V	D	I	I	T	Q	H	T	D	S	T	.	.	A	A	I	Q	V	A	H	D	R	G	.	.	.	I	K	A	F	G	Q	A
Template Known Secondary structure												T	T		T	T									S	S	S																T	.	.	.	.	T		S					S	S	S	S	S	.	.									T	T	.	.	.
Template Predicted Secondary structure																																												.	.	.	.													.	.											.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N
Query Conservation
Alig confidence				.	.	.
Template Conservation				.	.	.
Template Sequence		S	D	.	.	.	M	I	K	F	A	P	D	T	Q	L	T	A	V	V	D	E	W	G	P	Y	Y	I	D	R	A	K	A	V	L	D
Template Known Secondary structure		S		.	.	.		G	G	G	S	T	T	T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		231	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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