Job Description P0AEE5 Confidence 86.28% Date Thu Jan 5 11:23:08 GMT 2012 Rank 105 Aligned Residues 230 % Identity 10% Template c3p3wC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:glutamate receptor 3; PDBTitle: structure of a dimeric glua3 n-terminal domain (ntd) at 4.2 a2 resolution Resolution 4.20 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.										.
Query SS confidence																																				.	.										.
Query Sequence		A	A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	.	.	V	Q	L	L	M	N	D	S	Q	.	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V
Query Conservation																																				.	.										.
Alig confidence																																				.	.										.																								.
Template Conservation																																																																							.
Template Sequence		P	N	T	I	S	I	G	G	L	F	M	R	N	T	V	Q	E	H	S	A	F	R	F	A	V	Q	L	Y	N	T	N	Q	N	P	F	H	L	N	Y	H	V	D	H	L	D	S	S	N	S	F	S	V	T	N	A	F	C	S	Q	F	S	R	G	V	Y	A	I	F	G	.	F	Y	D	Q	M	S	M	N	T	L
Template Known Secondary structure													S	S																	S																S	S															T	T		S					.				T	T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E
Query Conservation
Alig confidence																			.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	F	C	G	A	L	H	T	S	F	V	T	P	S	F	P	.	.	.	.	.	.	.	T	D	A	D	V	Q	F	V	I	Q	M	R	P	A	L	K	G	A	I	L	S	L	L	S	Y	Y	K	W	E	K	F	V	Y	L	Y	D	T	E	R	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T						S	S			.	.	.	.	.	.	.		S	S			S	S					S														T	T										S	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.								.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I	P	V	F	G	V	D
Query Conservation
Alig confidence																																.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		S	V	L	Q	A	I	M	E	A	A	V	Q	N	N	W	Q	V	T	A	R	S	V	G	N	I	K	D	V	Q	E	.	.	.	.	F	R	R	I	I	E	E	M	D	R	R	Q	E	K	R	Y	L	I	D	C	E	V	E	R	I	N	T	I	L	E	Q	V	K	H	S	R	G	Y	H	Y	M	L	A	N	L	G
Template Known Secondary structure												T	T	T	T									S	S			S	T	T		.	.	.	.									T	T	T	T																			T					T	T								S
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	D	I	L	L	E	R	V	M	H	G	G	A	N	I	T	G	F	Q
Template Known Secondary structure			T	T	S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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