Job Description P0AEE5 Confidence 96.81% Date Thu Jan 5 11:23:08 GMT 2012 Rank 96 Aligned Residues 218 % Identity 12% Template c3om1A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution Resolution 1.68 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.				.	.																		.
Query SS confidence																																.	.	.	.	.	.	.				.	.																		.
Query Sequence		A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	.	.	.	.	.	.	.	A	P	D	.	.	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	.	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P
Query Conservation																																.	.	.	.	.	.	.				.	.																		.
Alig confidence											.																					.	.	.	.	.	.	.				.	.																		.
Template Conservation											.
Template Sequence		S	S	L	R	M	A	A	I	L	.	D	D	Q	T	V	C	G	R	G	E	R	L	A	L	A	L	A	R	E	Q	I	N	G	I	I	E	V	P	A	K	A	R	V	E	V	D	I	F	E	L	Q	R	D	S	Q	Y	E	T	T	D	T	M	C	Q	I	L	P	K	G	V	V	S	V	L	G	P	S	S	S	P
Template Known Secondary structure											.		S		S	S	S	S																	S			S	S													S	S														G	G	G			S						S	S
Template Predicted Secondary structure											.
Template SS confidence
		3	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	G	T	V	I	E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Sequence		A	S	A	S	T	V	S	H	I	C	G	E	K	E	I	P	H	I	K	V	G	P	E	E	T	P	R	L	Q	Y	L	R	F	A	S	V	S	L	Y	P	S	N	E	D	V	S	L	A	V	S	R	I	L	K	S	F	N	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	S	A	S	L	I	C	.	.	A
Template Known Secondary structure															T							S				S	S			G	G	G	G	G	G					S																	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.							.	.	S
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140													.	.	.	.	.	.			.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	P	D	A	E	A	R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I
Query Conservation
Alig confidence																																.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.
Template Sequence		K	A	E	C	L	L	R	L	E	E	L	V	R	G	F	L	I	S	K	E	T	L	S	V	R	M	L	D	D	R	.	.	.	.	.	.	D	P	T	P	L	L	K	E	I	R	D	D	K	V	S	T	I	I	I	D	A	N	A	S	I	S	H	L	V	L	R	K	A	S	E	L	G	M	T	S	A	F	Y	K
Template Known Secondary structure		S	T	T					T										S	S	S											.	.	.	.	.	.													T								S															T	T	T	T	S	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		254	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	F	G	V	D	A	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	I	L	T	T	M	D	F	P
Template Known Secondary structure							T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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