Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 46 Aligned Residues 267 % Identity 13% Template c3o74A_ PDB info PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida Resolution 2.00 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R
Query Conservation
Alig confidence																																.																																									.
Template Conservation																																.																																									.
Template Sequence		T	R	T	L	G	F	I	L	P	D	L	E	N	P	S	Y	A	R	I	A	K	Q	L	E	Q	G	A	R	A	R	.	G	Y	Q	L	L	I	A	S	S	D	D	Q	P	D	S	E	R	Q	L	Q	Q	L	F	R	A	R	R	C	D	A	L	F	V	A	S	C	L	P	P	E	.	D	D	S	Y	R	E	L	Q
Template Known Secondary structure										S		T	T																		T	.	T									T	T															T	T		S										S	S	.
Template Predicted Secondary structure																																.																																									.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y
Query Conservation
Alig confidence																		.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	G	L	P	V	I	A	I	D	R	R	L	D	P	A	.	.	.	.	.	.	H	F	C	S	V	I	S	D	D	R	D	A	S	R	Q	L	A	A	S	L	L	S	S	A	P	R	.	.	.	.	.	.	.	.	.	.	.	.	S	I	A	L	I	G	A	R	P	E	L	S	V	S	Q	A	R	A	G	G
Template Known Secondary structure			T	T							S	S				T	T	.	.	.	.	.	.	T																					T	T			S	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.							.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	K	S	S	I	P	V	F	G	V	D	A	L	P
Query Conservation																																																																			.	.
Alig confidence												.	.																												.																										.	.
Template Conservation												.	.																												.
Template Sequence		F	D	E	A	L	Q	G	Y	T	G	.	.	E	V	R	R	Y	Q	G	E	A	F	S	R	E	C	G	Q	R	L	X	Q	Q	L	I	D	D	L	G	.	G	L	P	D	A	L	V	T	T	S	Y	V	L	L	Q	G	V	F	D	T	L	Q	A	R	P	V	D	S	R	Q	L	Q	L	G	T	F	G	D	N	Q
Template Known Secondary structure						T	T	T			S	.	.								S	S	S	S																T	.	S			S					S	S													T	S		G	G	G									S			G
Template Predicted Secondary structure												.	.																												.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N
Query Conservation
Alig confidence										.	.	.																														.	.	.	.	.	.	.	.
Template Conservation										.	.	.																														.	.	.	.	.	.	.	.
Template Sequence		L	L	D	F	L	P	L	P	.	.	.	V	N	A	X	A	Q	Q	H	G	Q	I	A	A	T	A	L	E	L	A	L	A	A	I	E	E	K	R	Y	E	.	.	.	.	.	.	.	.	P	G	V	H	A	V	G	R	T	F	K	Q	R	I	S
Template Known Secondary structure		G	G	G	T	S	S	S		.	.	.																														.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																														.	.	.	.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.									.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions