Job Description P0AEE5 Confidence 97.87% Date Thu Jan 5 11:23:08 GMT 2012 Rank 88 Aligned Residues 224 % Identity 7% Template c3lopA_ PDB info PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum Resolution 1.55 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.										.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure															.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	R	I	G	V	T	I	Y	K	Y	D	D	.	.	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	.	.	.	.	.	.	.	.	.	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P
Query Conservation															.	.																	.	.	.	.	.	.	.	.	.
Alig confidence															.	.																	.	.	.	.	.	.	.	.	.		.
Template Conservation																																											.
Template Sequence		D	I	S	V	I	Q	S	L	P	L	S	G	S	Q	A	V	T	G	R	A	L	N	A	G	A	R	L	Y	F	D	W	L	N	L	N	G	G	I	N	G	E	.	T	I	R	L	V	A	R	D	D	E	Q	K	I	E	Q	T	V	R	N	V	R	D	X	A	R	V	D	N	P	V	A	L	L	T	V	V	G	T
Template Known Secondary structure											S	S	S	T	T																					T	T	T	B	T	T	B	.										T	T																S
Template Predicted Secondary structure																																											.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	G	T	V	I	E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	V	E	A	L	X	R	E	G	V	L	A	E	A	R	L	P	L	V	G	P	A	T	G	A	S	S	X	T	T	D	P	L	V	F	P	I	K	A	S	Y	Q	Q	E	I	D	K	X	I	T	A	L	V	T	I	G	V	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	V	L	Y	Q
Template Known Secondary structure										T	T						T					S		S				G	G	G	G	S		T	T					S																	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.															.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	P	D	A	E	A	R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I
Query Conservation
Alig confidence																																												.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		E	D	A	L	G	K	E	A	I	T	G	V	E	R	T	L	K	A	H	A	L	A	I	T	A	X	A	S	Y	P	R	N	T	A	N	V	G	P	A	V	D	K	.	.	.	.	.	L	L	A	A	D	V	Q	A	I	F	L	G	A	T	A	E	P	A	A	Q	F	V	R	Q	Y	R	A	R	G	G	E	A	Q
Template Known Secondary structure		T	T																T	T	T				S							T	T	S										.	.	.	.	.				S			S						S															T	T
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	F	G	V	D	A	L	P	E	A	L	A	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	G	L	S	S	I	D	P	G	I	L	Q	K	V
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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