Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 18 Aligned Residues 274 % Identity 21% Template c3l6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R	G
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		N	I	V	G	F	T	I	V	N	D	K	H	E	F	A	Q	R	L	I	N	A	F	K	A	E	A	K	A	N	.	K	Y	E	A	L	V	A	T	S	Q	N	S	R	I	S	E	R	E	Q	I	L	E	F	V	H	L	K	V	D	A	I	F	I	T	T	L	D	D	V	Y	I	G	S	A	I	E	E	A	K	K
Template Known Secondary structure									S		S		S																	T	.	T									S	S															T	T		S							S		T	T	T	T
Template Predicted Secondary structure																															.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y	V
Query Conservation
Alig confidence																		.	.	.	.	.																														.	.	.	.	.
Template Conservation																		.	.	.	.	.																														.	.	.	.	.
Template Sequence		A	G	I	P	V	F	A	I	D	R	X	I	R	S	D	A	.	.	.	.	.	V	V	S	S	I	T	S	N	N	Q	X	I	G	E	Q	L	A	S	Y	I	K	N	E	L	I	K	Q	T	G	.	.	.	.	.	R	S	T	G	R	I	V	E	I	T	G	T	A	N	V	Y	T	T	N	E	R	H	R	G	F
Template Known Secondary structure		T	T							S	S					T	T	.	.	.	.	.		S																											S	.	.	.	.	.		S										S	T	T
Template Predicted Secondary structure																		.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I	P	V	F	G	V	D	A	L	P	E	A	L
Query Conservation
Alig confidence										.																													.	.
Template Conservation										.																													.	.
Template Sequence		L	K	G	I	E	N	E	P	.	T	L	S	I	V	D	S	V	S	G	N	Y	D	P	V	T	S	E	R	V	X	R	Q	V	I	D	S	G	.	.	I	P	F	D	A	V	Y	C	H	N	D	D	I	A	X	G	V	L	E	A	L	K	K	A	K	I	S	G	K	I	V	V	G	I	D	G	N	R	A	I	L
Template Known Secondary structure						T	T		T	.	T										T	T															T	T	.	.				S					S	S														T	T
Template Predicted Secondary structure										.																													.	.
Template SS confidence
		158	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.
Template Sequence		E	A	V	D	X	K	S	X	D	A	T	V	V	Q	S	A	E	E	X	X	K	V	A	F	S	A	L	K	L	H	T	K	N	K	K	I	P	D	.	.	.	.	.	.	.	.	.	R	F	Y	T	Y	S	Y	L	Y	D
Template Known Secondary structure						T	T	S	S																								T	T					S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.										.	.	.	.	.	.	.	280	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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