Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 12 Aligned Residues 277 % Identity 17% Template c3l49D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 Resolution 2.30 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E
Query Conservation
Alig confidence																																			.
Template Conservation																																			.
Template Sequence		S	L	E	G	K	T	I	G	I	T	A	I	G	T	D	H	D	W	D	L	K	A	Y	Q	A	Q	I	A	E	I	E	R	L	.	G	G	T	A	I	A	L	D	A	G	R	N	D	Q	T	Q	V	S	Q	I	Q	T	L	I	A	Q	K	P	D	A	I	I	E	Q	L	G	N	L	D	V	L	N	P	W	L	Q
Template Known Secondary structure				T	T								S				S																	T	.	T									T	T																		S						S
Template Predicted Secondary structure																																			.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R
Query Conservation
Alig confidence																				.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	N	D	A	G	I	P	L	F	T	V	D	T	A	T	P	H	.	.	.	.	.	.	.	A	I	N	N	T	T	S	N	N	Y	S	I	G	A	E	L	A	L	Q	M	V	A	D	L	G	G	K	G	.	.	.	.	.	.	.	.	.	.	N	V	L	V	F	N	G	F	Y	S	V	P	V	C	K	I	R
Template Known Secondary structure						T	T							S				T	T	.	.	.	.	.	.	.		S																							T	T			.	.	.	.	.	.	.	.	.	.					B		S		T	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.											.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		T	T	Y	V	I	K	E	L	N	D	K	G	I	K	.	.	.	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I	P	V	F	G	V
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		Y	D	Q	M	K	Y	V	L	E	A	F	P	D	V	K	I	I	E	P	E	L	R	D	V	I	P	N	T	I	Q	S	A	Y	S	N	V	T	D	M	L	T	K	Y	P	N	E	G	D	V	G	A	I	W	A	C	W	D	V	P	M	I	G	A	T	Q	A	L	Q	A	A	G	R	T	D	I	R	T	Y	G	V
Template Known Secondary structure											T		T	T					S	S		B				S	S	S																S		S	T	T	S							S	S	S													T	T			S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		D	A	L	P	E	A	L	A	L	V	K	S	G	A	.	.	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N
Query Conservation																.	.
Alig confidence																.	.																															.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.
Template Sequence		D	G	S	P	E	F	V	E	M	V	A	D	P	E	S	P	A	G	A	V	A	A	Q	Q	P	S	E	I	G	K	L	A	V	Q	N	V	A	R	H	L	A	G	Q	E	V	K	.	.	.	.	.	.	.	.	.	P	F	T	F	A	P	A	V	L	I	T	K	E	N
Template Known Secondary structure														T	T	S																										T	T					.	.	.	.	.	.	.	.	.	S											S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.										.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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