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Job DescriptionP0AEE5
Confidence100.00%DateThu Jan 5 11:23:08 GMT 2012
Rank52Aligned Residues259
% Identity17%Templatec3k9cA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.
Resolution2.14 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.........90.........100.....
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Query Sequence  TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG
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Template Sequence  RLLGVV. FELQQPFHGDLVEQIYAAATRR. GYDVXLSAVAPS. RAEKVAVQALXRERCEAAILLGTRFD. . . TDELGALA
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   72..... ..80.........90......... 100.........110. ........120.........130....... ..140.....
 
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Query Sequence  QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV
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Template Sequence  DRVPALVVARASGLP. . . . . . GVGAVRGDDVAGITLAVDHLTELGHRNI. . . . . . . . . . . . . AHIDGADAPGGADRRAGF
Template Known Secondary structure  TTS
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SST......TS
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   146...150.........160 .........170.........180........ .190.........200......
 
   186...190.........200.........210.........220.........230.........240......... 250.........260..
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Query Sequence  IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN. . . KSSIPVFGVDALP
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Template Sequence  LAAXDRHGLSASATVVTGGTTETEGAEGXHTLLEXP. . . TPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYDDSR
Template Known Secondary structure  TT
GGG


SSTSS...S

SSSTT

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   207..210.........220.........230.........240.. .......250.........260.........270.........280...
 
   263......270.........280.........290.........300.........310.........320.....
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Query Sequence  EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDN
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Template Sequence  LARIPHVQ. . . XTTISQDATHXAEAAVDGALAQISGDKAV. . . . . . . . . . DLVLAPHLVRRAT
Template Known Secondary structure  TTT
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   284.....290. ........300.........310.........320 .........330...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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