Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 29 Aligned Residues 269 % Identity 13% Template c3k4hA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 Resolution 2.80 Å

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		24	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		A	D	T	R	I	G	V	T	I	Y	K	.	.	.	.	.	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.																					.																																								.	.
Template Conservation																																						.																																								.	.
Template Sequence		T	T	K	T	L	G	L	V	X	P	S	S	A	S	K	A	F	Q	N	P	F	F	P	E	V	I	R	G	I	S	S	F	A	H	V	E	.	G	Y	A	L	Y	X	S	T	G	E	T	E	E	E	I	F	N	G	V	V	K	X	V	Q	G	R	Q	I	G	G	I	I	L	L	Y	S	R	E	N	.	.	D	R
Template Known Secondary structure											S	S						T	T	S	T																T	.	T										S														T	T								S			B	T	T	.	.
Template Predicted Secondary structure																																						.																																								.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A
Query Conservation
Alig confidence																	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	Q	Y	L	H	E	Q	N	F	P	F	V	L	I	.	.	.	.	.	G	K	P	Y	D	R	K	D	E	I	T	Y	V	D	N	D	N	Y	T	A	A	R	E	V	A	E	Y	L	I	S	L	G	H	K	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	A	F	I	G	G	G	S	D	L	L	V	T
Template Known Secondary structure									T	T							.	.	.	.	.	S			S	S		T	T	T	S																					T	T			.	.	.	.	.	.	.	.	.	.	.	.							S		T	T	B
Template Predicted Secondary structure																	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.													.	.	.	.	.	.	.	140	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		E	A	R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V
Query Conservation																																																																									.	.	.
Alig confidence																																														.	.																										.	.	.
Template Conservation																																														.	.
Template Sequence		R	D	R	L	A	G	X	S	D	A	L	K	L	A	D	I	V	L	P	K	E	Y	I	L	H	F	D	F	S	R	E	S	G	Q	Q	A	V	E	E	L	X	G	L	Q	.	.	Q	P	P	T	A	I	X	A	T	D	D	L	I	G	L	G	V	L	S	A	L	S	K	K	G	F	V	V	P	K	D	V	S	I
Template Known Secondary structure															T	T					G	G	G						S	S													T	S	S	.	.	S			S					S	S														T	T			T	T	T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	V	D	A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N
Query Conservation
Alig confidence																	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																														.	.	.	.	.	.	.	.
Template Sequence		V	S	F	N	N	A	L	L	S	E	I	A	S	P	P	.	.	.	L	S	T	V	D	V	N	I	Y	Q	L	G	Y	E	A	A	K	A	L	V	D	K	V	E	N	A	E	S	T	.	.	.	.	.	.	.	.	A	K	C	I	I	I	P	H	K	L	L	K	R	Q	T
Template Known Secondary structure					S								S	S	S		.	.	.																											S			.	.	.	.	.	.	.	.														S	S
Template Predicted Secondary structure																	.	.	.																														.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.									.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions