Job Description P0AEE5 Confidence 98.20% Date Thu Jan 5 11:23:08 GMT 2012 Rank 81 Aligned Residues 261 % Identity 10% Template c3i09A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution Resolution 1.80 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.							.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																	.	.			.																		.	.	.	.	.	.
Query SS confidence																	.	.			.																		.	.	.	.	.	.
Query Sequence		A	A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	.	.	N	F	.	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	.	.	.	.	.	.	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P
Query Conservation																	.	.			.																		.	.	.	.	.	.
Alig confidence																	.	.			.																		.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	S	V	K	I	G	F	I	T	D	X	S	G	L	Y	A	D	I	D	G	Q	G	G	L	E	A	I	K	X	A	V	A	D	F	G	G	K	V	N	G	K	P	I	E	V	V	Y	A	D	H	Q	N	K	A	D	I	A	A	S	K	A	R	E	W	X	D	R	G	G	L	D	L	L	V	G	G	T	N	S
Template Known Secondary structure			S	S									S	S	S	T	T	T	T	T	S																T	S			T	T											T	T																S									S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		A	A	A	G	T	V	I	E	K	A	R	G	Q	N	V	P	V	V	.	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E
Query Conservation																				.
Alig confidence																				.																																										.	.	.	.	.	.	.	.	.	.	.	.						.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.						.	.
Template Sequence		A	T	A	L	S	X	N	Q	V	A	A	E	K	K	K	V	Y	I	N	I	G	A	G	A	D	T	L	T	N	E	Q	C	T	P	Y	T	V	H	Y	A	Y	D	T	X	A	L	A	K	G	T	G	S	A	V	V	K	Q	G	G	K	.	.	.	.	.	.	.	.	.	.	.	.	T	W	F	F	L	.	.	T
Template Known Secondary structure															T							S				G	G	G	G	T	T	T			T	T					S																	T	T			.	.	.	.	.	.	.	.	.	.	.	.						.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.						.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.													.	.	.	.	.			170
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	H	P	D	A	E	A	R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S
Query Conservation
Alig confidence																																													.	.	.	.
Template Conservation																																													.	.	.	.
Template Sequence		A	D	Y	A	F	G	K	A	L	E	K	N	T	A	D	V	V	K	A	N	G	G	K	V	L	G	E	V	R	H	P	L	S	A	S	D	F	S	S	F	L	L	Q	.	.	.	.	A	Q	S	S	K	A	Q	I	L	G	L	A	N	A	G	G	D	T	V	N	A	I	K	A	A	K	E	F	G	I	T	K	T
Template Known Secondary structure			S	S																	T	T											T	T		S									.	.	.	.				T			S																					T	T	G	G	G	T
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		I	P	V	F	G	V	D	A	L	P	E	A	L	A	L	V	.	.	.	.	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.
Template Conservation
Template Sequence		X	K	L	A	A	L	L	X	F	I	N	D	V	H	A	L	G	L	E	T	T	Q	G	L	V	L	T	D	S	W	Y	W	N	R	D	Q	A	S	R	Q	W	A	Q	R	Y	F	A	K	X	K	K	X	P
Template Known Secondary structure							S	S															T	T						S			T	T	S	S															S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions