Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 47 Aligned Residues 262 % Identity 10% Template c3gv0A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens Resolution 2.35 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	.	.	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E
Query Conservation																.	.
Alig confidence																.	.																		.																																								.	.
Template Conservation																																			.																																								.	.
Template Sequence		K	T	N	V	I	A	L	V	L	S	V	D	E	E	L	X	G	F	T	S	Q	X	V	F	G	I	T	E	V	L	S	T	T	.	Q	Y	H	L	V	V	T	P	H	I	H	A	K	D	S	X	V	P	I	R	Y	I	L	E	T	G	S	A	D	G	V	I	I	S	K	I	E	P	N	.	.	D	P	R	V	R
Template Known Secondary structure											B					S	S															T	T	S	.	S								B	S	S	G	G	G	T	T										T			S						S			T	T	.	.
Template Predicted Secondary structure																																			.																																								.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R
Query Conservation
Alig confidence																					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	X	T	E	R	N	X	P	F	V	T	H	G	R	S	D	X	G	I	.	.	.	.	.	.	E	H	A	F	H	D	F	D	N	E	A	Y	A	Y	E	A	V	E	R	L	A	Q	C	G	R	K	.	.	.	.	.	.	.	.	.	.	.	.	R	I	A	V	I	V	P	P	S	R	F	S	F	H	D	H	A
Template Known Secondary structure						T	T							S				S	S		.	.	.	.	.	.																							T	T			.	.	.	.	.	.	.	.	.	.	.	.									T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.													.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G	V
Query Conservation																																																																						.	.	.
Alig confidence																																											.	.																										.	.	.
Template Conservation																																											.	.
Template Sequence		R	K	G	F	N	R	G	I	R	D	F	G	L	T	E	F	P	I	D	A	V	T	I	E	T	P	L	E	K	I	R	D	F	G	Q	R	L	X	Q	S	S	.	.	D	R	P	D	G	I	V	S	I	S	G	S	S	T	I	A	L	V	A	G	F	E	A	A	G	V	K	I	G	E	D	V	D	I	V	S	K
Template Known Secondary structure												T	T								S			T	T	S													T	T	S	S	.	.	S			S					S														T	T	T			T	T	T	S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y
Query Conservation
Alig confidence														.	.	.																																	.	.	.	.	.	.	.
Template Conservation														.	.	.																																	.	.	.	.	.	.	.
Template Sequence		Q	S	A	E	F	L	N	W	I	K	P	Q	.	.	.	I	H	T	V	N	E	D	I	K	L	A	G	R	E	L	A	K	A	L	L	A	R	I	N	G	E	A	A	E	T	L	Q	.	.	.	.	.	.	.	S	I	S	G	P	V
Template Known Secondary structure			S	S	T	T						T	T	.	.	.	S																							T	T			G	G	G	S		.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.																																	.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.				.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.								.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions