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Job DescriptionP0AEE5
Confidence97.97%DateThu Jan 5 11:23:08 GMT 2012
Rank84Aligned Residues214
% Identity11%Templatec3eafA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  DTRIGVTIY. . KYDDNFMSVVRKAIEQDAKAA. . . . . . PD. . . . . . VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINL
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Template Sequence  TINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG.
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   45....50.........60.........70.........80.........90.........100.........110.........120...
 
   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  VDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK
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Template Sequence  WGTADTEKLSDQVDTDKITYI. . . SASYSAKLLVKPFNFYPAPDYSTQACSGLAFLASEFGQG. . . . . . . . . . . KLALAY
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   124.....130.........140.... .....150.........160.........170.........180... ......
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  GEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK
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Template Sequence  D. SKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREXLAA. . . DPDYVWCGNTISSCSLLGRAXAKVGL
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TTTGGGT

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   190 .........200.........210.........220.........230......... 240.........250.........260.....
 
   251......
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Query Sequence  SSIPVFG
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Template Sequence  DAFLLTN
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   266...270..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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