Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 48 Aligned Residues 263 % Identity 16% Template c3ctpB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose Resolution 1.41 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R
Query Conservation
Alig confidence																																.																																								.	.	.	.	.	.
Template Conservation																																.																																								.	.	.	.	.	.
Template Sequence		S	K	T	I	G	L	M	V	P	N	I	S	N	P	F	F	N	Q	M	A	S	V	I	E	E	Y	A	K	N	K	.	G	Y	T	L	F	L	C	N	T	D	D	D	K	E	K	E	K	T	Y	L	E	V	L	Q	S	H	R	V	A	G	I	I	A	S	R	S	Q	C	E	.	.	.	.	.	.	D	E	Y	A
Template Known Secondary structure										S		T	T	S																	T	.	T									T	T															T	T		S						S				S	.	.	.	.	.	.	G	G	G	T
Template Predicted Secondary structure																																.																																								.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y
Query Conservation
Alig confidence																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	D	I	P	V	V	A	F	E	N	H	I	L	D	.	.	.	.	.	.	.	N	I	I	T	I	S	S	D	N	Y	N	G	G	R	M	A	F	D	H	L	Y	E	K	G	C	R	.	.	.	.	.	.	.	.	.	.	.	.	K	I	L	H	I	K	G	P	E	V	F	E	A	T	E	L	R	Y	K	G
Template Known Secondary structure		T			S						S	S				T	.	.	.	.	.	.	.	T	S																					T	T			.	.	.	.	.	.	.	.	.	.	.	.	S								T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.													.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I	P	V	F	G	V	D	A	L	P	E	A
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		F	L	D	G	A	R	A	K	D	L	E	I	D	F	I	E	F	Q	.	H	D	F	Q	V	K	M	L	E	E	D	I	N	S	M	K	D	I	V	N	Y	D	G	I	F	V	F	N	D	I	A	A	A	T	V	M	R	A	L	K	K	R	G	V	S	I	P	Q	E	V	Q	I	I	G	F	D	N	S	F	I	G
Template Known Secondary structure									T	T									S	.	S	S			G	G	G	G	G				T	T	G	G	G	G	G	G	S	S					S	S														T	T			T	T	T	T						S	B			T
Template Predicted Secondary structure																				.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N
Query Conservation
Alig confidence								.	.	.																														.	.	.	.	.	.	.	.
Template Conservation								.	.	.																														.	.	.	.	.	.	.	.
Template Sequence		E	L	L	Y	P	S	.	.	.	L	T	T	I	N	Q	P	I	E	A	L	A	Y	T	I	I	E	L	L	I	K	I	I	N	G	E	G	V	L	.	.	.	.	.	.	.	.	I	E	D	Y	I	M	E	V	K	L	I	E	R	E	T
Template Known Secondary structure				S	S	S		.	.	.		B																							T					.	.	.	.	.	.	.	.														S	S
Template Predicted Secondary structure								.	.	.																														.	.	.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.									.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions