Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 43 Aligned Residues 260 % Identity 18% Template c3cs3A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis Resolution 2.40 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E
Query Conservation
Alig confidence																																			.															.	.	.	.	.	.	.																			.	.
Template Conservation																																			.															.	.	.	.	.	.	.																			.	.
Template Sequence		R	R	Q	T	N	I	I	G	V	Y	L	A	D	Y	G	G	S	F	Y	G	E	L	L	E	G	I	K	K	G	L	A	L	F	.	D	Y	E	M	I	V	C	S	G	K	K	S	H	L	.	.	.	.	.	.	.	F	I	P	E	K	M	V	D	G	A	I	I	L	D	W	T	F	P	.	.	T	K	E	I	E
Template Known Secondary structure														S	S		T	T	T														T	T	.	T								S	T	T	T	T	T	.	.	.	.	.	.	.				T	T	T		S							T	T	S		.	.
Template Predicted Secondary structure																																			.															.	.	.	.	.	.	.																			.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.								.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R
Query Conservation
Alig confidence																					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	A	E	R	G	H	S	I	V	V	L	D	R	T	T	E	H	R	.	.	.	.	.	.	N	I	R	Q	V	L	L	D	N	R	G	G	A	T	Q	A	I	E	Q	F	V	N	V	G	S	K	.	.	.	.	.	.	.	.	.	.	.	.	K	V	L	L	L	S	G	P	E	K	G	Y	D	S	Q	E	R
Template Known Secondary structure						T	T						S	S	S				S	T	.	.	.	.	.	.	T																						T	T		S	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170													.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G	V
Query Conservation																																																																						.	.	.
Alig confidence																																				.	.	.	.																															.	.	.
Template Conservation																																				.	.	.	.
Template Sequence		L	A	V	S	T	R	E	L	T	R	F	G	I	P	Y	E	I	I	Q	G	D	F	T	E	P	S	G	Y	A	A	A	K	K	I	.	.	.	.	L	S	Q	P	Q	T	E	P	V	D	V	F	A	F	N	D	E	M	A	I	G	V	Y	K	Y	V	A	E	T	N	Y	Q	M	G	K	D	I	R	I	I	G	F
Template Known Secondary structure												T	T										S	S												.	.	.	.	T	T	S				S	S						S	S												T	T	S	S			B	T	T	T						S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N	L
Query Conservation
Alig confidence														.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	S	E	L	G	A	F	V	Q	P	R	.	.	.	L	A	T	I	A	Y	S	K	H	R	W	G	M	V	A	A	E	K	I	I	H	L	M	R	G	E	A	A	E	S	.	.	.	.	.	.	.	.	.	.	E	H	I	Y	T	R	F	I	E	G	E	S	F
Template Known Secondary structure		S								S	S	S		.	.	.		B																						T	T						.	.	.	.	.	.	.	.	.	.											T	T	S
Template Predicted Secondary structure														.	.	.																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.											.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions