Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 40 Aligned Residues 266 % Identity 14% Template c2qu7B_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus Resolution 2.30 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A
Query Conservation
Alig confidence													.																				.																																													.	.	.	.
Template Conservation													.																				.																																													.	.	.	.
Template Sequence		R	S	N	I	I	A	F	I	V	P	D	.	Q	N	P	F	F	T	E	V	L	T	E	I	S	H	E	C	Q	K	H	.	H	L	H	V	A	V	A	S	S	E	E	N	E	D	K	Q	Q	D	L	I	E	T	F	V	S	Q	N	V	S	A	I	I	L	V	P	V	K	S	K	F	Q	M	K	R	.	.	.	.
Template Known Secondary structure											S	S	.																	G	G	G	.	T									T	T															T	T									S	S	S	S					G	.	.	.	.
Template Predicted Secondary structure													.																				.																																													.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T
Query Conservation
Alig confidence																			.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	W	L	K	I	P	I	M	T	L	D	R	E	L	E	S	T	.	.	.	.	.	.	S	L	P	S	I	T	V	D	N	E	E	A	A	Y	I	A	T	K	R	V	L	E	S	T	C	K	.	.	.	.	.	.	.	.	.	.	.	.	E	V	G	L	L	L	A	N	P	N	I	S	T	T	I	G	R	K	N
Template Known Secondary structure		G	G	T	T	S						S	S			T	T		.	.	.	.	.	.																						T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	S								T	T	S
Template Predicted Secondary structure																			.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.													180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.																											.	.	.
Query SS confidence																																										.	.																											.	.	.
Query Sequence		Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	.	.	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G	V
Query Conservation																																										.	.																											.	.	.
Alig confidence																																										.	.																											.	.	.
Template Conservation
Template Sequence		G	Y	N	K	A	I	S	E	F	D	L	N	V	N	P	S	L	I	H	Y	S	D	Q	Q	L	G	T	N	A	Q	I	Y	S	G	Y	E	A	T	K	T	L	L	S	K	G	I	K	G	I	V	A	T	N	H	L	L	L	L	G	A	L	Q	A	I	K	E	S	E	K	E	I	K	K	D	V	I	I	V	G	F
Template Known Secondary structure										T	T					G	G	G						S	S		S																		T	T								S														S	S			B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N	L
Query Conservation
Alig confidence														.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Sequence		D	D	S	Y	W	N	E	I	Y	T	P	K	.	.	.	L	T	V	I	S	Q	P	V	K	E	M	G	Q	V	A	A	K	M	I	Y	K	L	I	K	G	K	D	V	T	S	.	.	.	.	.	.	.	.	.	.	I	K	L	S	T	K	L	I	I	R	E	S	C
Template Known Secondary structure		S								S	S	S		.	.	.																								T	T						.	.	.	.	.	.	.	.	.	.											S	T	T
Template Predicted Secondary structure														.	.	.																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320											.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions