Job Description P0AEE5 Confidence 99.93% Date Thu Jan 5 11:23:08 GMT 2012 Rank 67 Aligned Residues 273 % Identity 15% Template c2qh8A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 Resolution 2.20 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.							.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.
Query Sequence		A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	.	.	.	.	.	.	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G
Query Conservation																																				.	.	.	.	.	.
Alig confidence								.																									.			.	.	.	.	.	.
Template Conservation								.																									.
Template Sequence		K	T	A	K	V	A	.	V	S	Q	I	V	E	H	P	A	L	D	A	T	R	Q	G	L	L	D	G	L	K	A	K	.	G	Y	E	E	G	K	N	L	E	F	D	Y	K	T	A	Q	G	N	P	A	I	A	V	Q	I	A	R	Q	F	V	G	E	N	P	D	V	L	V	G	I	A	T	P	T	A	Q	A	L
Template Known Secondary structure								.				S	S																			T	.	T			B	T	T	T									T	T															T			S						S
Template Predicted Secondary structure								.																									.
Template SS confidence
		26	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	I	E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.									.
Template Sequence		V	S	A	T	K	T	I	P	I	V	F	T	A	V	T	D	P	V	G	A	K	L	V	K	Q	L	E	Q	P	G	K	N	V	T	G	L	S	D	L	S	P	V	E	Q	H	V	E	L	I	K	E	I	L	P	N	V	K	.	.	.	.	.	.	.	.	.	.	S	I	G	V	V	Y	N	P	.	G	E	A	N
Template Known Secondary structure						S	S	S								S		T	T	T	T	T	S		S		S	S	S			S	S																					S	T	T			.	.	.	.	.	.	.	.	.	.								T	.	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160											.	.	.	.	.	.	.	.		.	170	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		A	E	A	R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	.	S	S	I	P	V	F
Query Conservation																																																																											.
Alig confidence																																								.	.	.	.	.	.	.	.	.																											.
Template Conservation																																								.	.	.	.	.	.	.	.	.
Template Sequence		A	V	S	L	X	E	L	L	K	L	S	A	A	K	H	G	I	K	L	V	E	A	T	A	L	K	S	A	D	V	Q	S	A	T	Q	A	I	A	.	.	.	.	.	.	.	.	.	E	K	S	D	V	I	Y	A	L	I	D	N	T	V	A	S	A	I	E	G	X	I	V	A	A	N	Q	A	K	T	P	V	F
Template Known Secondary structure																T	T									S	S	G	G	G									G	.	.	.	.	.	.	.	.	.	G	G		S						S						T	T											T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210										.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	D	A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N	L	A	E	F
Query Conservation
Alig confidence						.	.	.	.	.							.																																												.	.	.	.	.
Template Conservation						.	.	.	.	.							.																																												.	.	.	.	.
Template Sequence		G	A	A	T	.	.	.	.	.	S	Y	V	E	R	G	.	A	I	A	S	L	G	F	D	Y	Y	Q	I	G	V	Q	T	A	D	Y	V	A	A	I	L	E	G	K	E	P	G	S	L	D	V	Q	V	A	K	G	S	D	L	V	.	.	.	.	.	I	N	K	T	A	A	E	Q	L
Template Known Secondary structure			S	S		.	.	.	.	.					T	T	.		S																							T	T			G	G	G	S												.	.	.	.	.									T
Template Predicted Secondary structure						.	.	.	.	.							.																																												.	.	.	.	.
Template SS confidence
		244	.	.	.						.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions