Job Description P0AEE5 Confidence 100.00% Date Thu Jan 5 11:23:08 GMT 2012 Rank 24 Aligned Residues 272 % Identity 15% Template c2iksA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 Resolution 1.85 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K
Query Conservation
Alig confidence																																		.																																								.
Template Conservation																																		.																																								.
Template Sequence		G	R	T	R	S	I	G	L	V	I	P	D	L	E	N	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	.	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	X	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	.	E	H	P	F	Y	Q	R
Template Known Secondary structure												S		S		S																	T	.	T									T	T															T	T		S							S	S		T	.	T						T
Template Predicted Secondary structure																																		.																																								.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T
Query Conservation
Alig confidence																				.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	A	N	D	P	F	P	I	V	A	L	D	R	A	L	D	R	E	.	.	.	.	.	.	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	X	L	A	E	E	L	R	K	F	P	A	E	.	.	.	.	.	.	.	.	.	.	.	.	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E
Template Known Secondary structure		T	T	T	S	S	S							S				T	T	.	.	.	.	.	.	T																					T	S			S	.	.	.	.	.	.	.	.	.	.	.	.	S								T	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.							.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G	V	D
Query Conservation																																																																					.	.	.
Alig confidence																			.	.																						.	.																										.	.	.
Template Conservation																			.	.																						.	.
Template Sequence		Q	G	F	R	T	A	W	K	D	D	P	R	E	V	H	F	L	.	.	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	.	.	P	X	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	X	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G
Template Known Secondary structure									T	T									.	.			S	S	S													T	T	T	S	.	.				S					S	S																S	S			S	S							S
Template Predicted Secondary structure																			.	.																						.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N	L	A	E
Query Conservation
Alig confidence													.	.	.																															.	.	.	.	.	.	.
Template Conservation													.	.	.																															.	.	.	.	.	.	.
Template Sequence		D	N	E	L	L	D	F	L	Q	C	P	.	.	.	V	L	A	V	A	Q	R	H	R	D	V	A	E	R	V	L	E	I	V	L	A	S	L	D	E	P	R	K	P	K	.	.	.	.	.	.	.	P	G	L	T	R	I	K	R	N	L	Y	R	R	G	V	L	S	R
Template Known Secondary structure				G	G	G	G	G		S	S		.	.	.																									S	S	S				.	.	.	.	.	.	.															G	G	G	G
Template Predicted Secondary structure													.	.	.																															.	.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.								.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions