Job Description P0AEE5 Confidence 99.93% Date Thu Jan 5 11:23:08 GMT 2012 Rank 66 Aligned Residues 265 % Identity 13% Template c2hqbA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans Resolution 2.70 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R	G	Q
Query Conservation
Alig confidence									.	.																				.
Template Conservation									.	.																				.
Template Sequence		X	V	G	L	L	V	E	.	.	D	T	G	W	N	R	K	A	Y	E	G	L	L	N	I	H	S	N	L	.	D	V	D	V	V	L	E	E	G	V	N	S	E	Q	K	A	H	R	R	I	K	E	L	V	D	G	G	V	N	L	I	F	G	H	G	H	A	F	A	E	Y	F	S	T	I	H	N	Q	Y	P	D
Template Known Secondary structure									.	.					T														S	.												S														T	T								S	T								T	T	T	T	S		T	T
Template Predicted Secondary structure									.	.																				.
Template SS confidence
		1	.	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y	V	I
Query Conservation
Alig confidence								.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation								.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Sequence		V	H	F	V	S	F	.	.	.	.	.	.	.	N	G	E	V	K	G	E	N	I	T	S	L	H	F	E	G	Y	A	X	G	Y	F	G	G	X	V	A	A	S	X	S	E	T	H	.	.	.	.	.	.	.	.	.	.	.	K	V	G	V	I	A	A	F	P	W	Q	.	.	.	.	P	E	V	E	G	F	V
Template Known Secondary structure		S						.	.	.	.	.	.	.	S					S	S	S																						T		S	S	S	.	.	.	.	.	.	.	.	.	.	.							S		T	T		.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template SS confidence
		82	.	.	.	.	.								.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.												.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I	P	V	F	G	V	D	A	L	P	E	A	L	A
Query Conservation
Alig confidence																																				.	.	.	.																											.	.	.									.	.	.
Template Conservation																																				.	.	.	.																											.	.	.									.	.	.
Template Sequence		D	G	A	K	Y	X	N	E	S	E	A	F	V	R	Y	V	G	E	W	T	D	A	D	K	A	L	E	L	F	Q	E	L	Q	K	.	.	.	.	E	Q	V	D	V	F	Y	P	A	G	D	G	Y	H	V	P	V	V	E	A	I	K	D	Q	G	D	.	.	.	F	A	I	G	Y	V	G	D	.	.	.	Q	A
Template Known Secondary structure							T	T										S	S	S	S														T	.	.	.	.	T	T									T	T	T												T		.	.	.							S		.	.	.		S
Template Predicted Secondary structure																																				.	.	.	.																											.	.	.									.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.				.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	.	.	V	G	V	D	K	D	N	L	A	E	F
Query Conservation																																																						.	.
Alig confidence																										.	.	.																										.	.
Template Conservation																										.	.	.
Template Sequence		D	L	G	G	S	T	I	L	T	S	T	V	Q	H	V	D	D	L	Y	V	L	V	A	K	.	.	.	R	F	Q	E	G	K	L	E	S	G	N	L	Y	Y	D	F	Q	D	G	V	V	S	L	G	E	F	S	S	V	V	P	D	E	V	R	E	Q	I
Template Known Secondary structure		S	S	S		S	S																			.	.	.		T	T	T	T											G	G	G	T	S								T	T	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions