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Job DescriptionP0AEE5
Confidence100.00%DateThu Jan 5 11:23:08 GMT 2012
Rank59Aligned Residues249
% Identity17%Templatec2h0aA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ
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Template Sequence  TVSVLLPFVATEFYRRLVEGIEGVLLEQ. RYDLALFPILSLAR. . . . . . . . . LKYLTDGLILASYDLTRL. . . . . . . . PT
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   65....70.........80.........90.. .......100...... ...110.........120.... ..
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVI
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Template Sequence  ERPVVLVDAQNPR. . . . . . . . YDSVYLDNRLGGRLAGAYLARFPGPIF. . . . . . . . . . AIAVEEEPDRRTVFAERMAGFQ
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   142.......150.... .....160.........170.........180. ........190.........200...
 
   187..190.........200.........210.........220.........230.........240......... 250.........260...
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Query Sequence  KELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN. . . KSSIPVFGVDALPE
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Template Sequence  EALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKA. . SPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDGHPF
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   207..210.........220.........230.........240.. .......250.........260.........270.........280....
 
   264.....270.........280.........290.........300.........310.........320......
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Query Sequence  ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNL
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Template Sequence  AEE. . . . . AGLSTIAQPVEAMGARAAQLLLERMRGYQGP. . . . . . . . PREVRFEPVLVERAST
Template Known Secondary structure  .....T


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   285.. ..290.........300.........310........ .320.........330....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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