Job Description P0AEE5 Confidence 99.92% Date Thu Jan 5 11:23:08 GMT 2012 Rank 68 Aligned Residues 284 % Identity 13% Template c2fqxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine Resolution 1.70 Å

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		25	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		D	T	R	I	G	V	T	I	Y	K	Y	D	.	.	.	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E
Query Conservation														.	.	.
Alig confidence														.	.	.																			.													.
Template Conservation																																			.													.
Template Sequence		D	F	V	V	G	M	V	T	D	S	G	D	I	D	D	K	S	F	N	Q	Q	V	W	E	G	I	S	R	F	A	Q	E	N	.	N	A	K	C	K	Y	V	T	A	S	T	D	.	A	E	Y	V	P	S	L	S	A	F	A	D	E	N	M	G	L	V	V	A	C	G	S	F	L	V	E	A	V	I	E	T	S
Template Known Secondary structure										S	S	S		T	T	S	S	S																T	.	T										S	G	.	G	G											T	T		S						S	T	T	T
Template Predicted Secondary structure																																			.													.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R
Query Conservation
Alig confidence													.	.	.	.	.	.																																					.	.	.	.	.	.	.	.											.
Template Conservation													.	.	.	.	.	.																																					.	.	.	.	.	.	.	.											.
Template Sequence		A	R	F	P	K	Q	K	F	L	V	I	.	.	.	.	.	.	D	A	V	V	Q	D	R	D	N	V	V	S	A	V	F	G	Q	N	E	G	S	F	L	V	G	V	A	A	A	L	K	A	K	E	A	G	.	.	.	.	.	.	.	.	K	S	A	V	G	F	I	V	G	M	.	E	L	G	M	M	P	L	F
Template Known Secondary structure					T	T	S						.	.	.	.	.	.	S	S				S		T	T																										T	T	.	.	.	.	.	.	.	.									S		.		S	T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.																																					.	.	.	.	.	.	.	.											.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.							.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.									.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.																																												.	.
Query SS confidence																											.																																												.	.
Query Sequence		T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	.	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	K	S	S	I	P	V	F	G	V
Query Conservation																											.																																												.	.
Alig confidence																											.															.	.	.	.																										.	.
Template Conservation																																										.	.	.	.
Template Sequence		E	A	G	F	E	A	G	V	K	A	V	D	P	D	I	Q	V	V	V	E	V	A	N	T	F	S	D	P	Q	K	G	Q	A	L	A	A	K	L	Y	D	.	.	.	.	S	G	V	N	V	I	F	Q	V	A	G	G	T	G	N	G	V	I	K	E	A	R	D	R	R	L	N	G	Q	D	V	W	V	I	G	V
Template Known Secondary structure														T	T									S		S	S															.	.	.	.	T	T									G	G	G														T	T
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		259	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure				.	.																																														.													.	.	.	.	.
Query SS confidence				.	.																																														.													.	.	.	.	.
Query Sequence		D	A	.	.	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	.	N	W	K	I	D	N	K	V	V	R	V	P	.	.	.	.	.	Y	V	G	V	D	K	D	N	L	A	E	F	S
Query Conservation				.	.																																														.													.	.	.	.	.
Alig confidence				.	.																																			.	.	.									.													.	.	.	.	.
Template Conservation																																								.	.	.
Template Sequence		D	R	D	Q	Y	M	D	G	V	Y	D	G	S	K	S	V	V	L	T	S	M	V	K	R	A	D	V	A	A	E	R	I	S	K	M	A	Y	D	.	.	.	G	S	F	P	G	G	Q	S	I	M	F	G	L	E	D	K	A	V	G	I	P	E	E	N	P	N	L	S	S	A	V	M	E	K	I	R	S	F	E
Template Known Secondary structure			S			G	G	G	G	B		S	S	S		B	S																							.	.	.	T				T	T							G	G	G	T	S					S			T	T	S
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		331	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		315	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions